CRISPRone

CRISPRone report for GCA_004315505.1_ASM431550v1

♦ Seq 1: BIQI01000033.1 Clostridioides difficile FD098 DNA, sequence33, whole genome shotgun sequence

⇒Summary: seq-len = 36058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31145-32488 bp Zoom in on locus 1 x21 CRISPR array Location: 31145-32488 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 31145-32488 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31145-32488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQI01000058.1 Clostridioides difficile FD098 DNA, sequence58, whole genome shotgun sequence

⇒Summary: seq-len = 12424 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5869-8923 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 5869-6029 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5869-6029 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8697-8923 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 8697-8923 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5869-6029 bp]: array | spacers
           [Locus range 8697-8923 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQI01000002.1 Clostridioides difficile FD098 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 254533 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87977-99108 bp Zoom in on locus 1 x23 CRISPR array Location: 87977-89449 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 87977-89449 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 89754-90020 bp Gene: cd09722:cas1 Type: universal Location: 90023-91003 bp Gene: pfam01930:cas4 Type: Type-I Location: 91006-91524 bp Gene: COG1203:cas3 Type: Type-I Location: 91572-93893 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 93904-94605 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 94607-95521 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 95523-97373 bp Gene: pfam01881:cas6 Type: other Location: 97379-98173 bp Gene: pfam13280:WYL Type: other Location: 98194-99108 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87977-89449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQI01000001.1 Clostridioides difficile FD098 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 323748 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117093-124958 bp 2 Locus 2: 198238-198397 bp Zoom in on locus 1 Zoom in on locus 2 x3 Gene: cd09641:cas3HD Type: Type-I Location: 117093-119501 bp Gene: cd09693:cas5 Type: Type-I Location: 119528-120325 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120341-121354 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121374-122849 bp Gene: pfam01881:cas6 Type: other Location: 122854-123591 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 123849-124958 bp CRISPR array Location: 198238-198397 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 198238-198397 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 198238-198397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQI01000052.1 Clostridioides difficile FD098 DNA, sequence52, whole genome shotgun sequence

⇒Summary: seq-len = 18811 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10450-11464 bp Zoom in on locus 1 x16 CRISPR array Location: 10450-11464 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 10450-11464 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10450-11464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQI01000004.1 Clostridioides difficile FD098 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 186397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110067-110957 bp Zoom in on locus 1 x14 CRISPR array Location: 110067-110957 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 110067-110957 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110067-110957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQI01000022.1 Clostridioides difficile FD098 DNA, sequence22, whole genome shotgun sequence

⇒Summary: seq-len = 57007 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17850-18338 bp Zoom in on locus 1 x8 CRISPR array Location: 17850-18338 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17850-18338 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17850-18338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQI01000008.1 Clostridioides difficile FD098 DNA, sequence08, whole genome shotgun sequence

⇒Summary: seq-len = 138439 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25037-25132 bp Zoom in on locus 1 x2 CRISPR array Location: 25037-25132 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25037-25132 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25037-25132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)