CRISPRone

CRISPRone report for GCA_004315645.1_ASM431564v1

♦ Seq 1: BIQP01000003.1 Clostridioides difficile FD106 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 132646 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51791-61514 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51791-54199 bp Gene: cd09693:cas5 Type: Type-I Location: 54226-55023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55039-56052 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56072-57538 bp Gene: pfam01881:cas6 Type: other Location: 57543-58280 bp Gene: unk Type: unknown Location: 58594-59052 bp Gene: cas14:cas14 Type: Type-V Location: 59080-60252 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60405-61514 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQP01000033.1 Clostridioides difficile FD106 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 42519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3001-3621 bp Zoom in on locus 1 x10 CRISPR array Location: 3001-3621 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3001-3621 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3001-3621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQP01000048.1 Clostridioides difficile FD106 DNA, sequence048, whole genome shotgun sequence

⇒Summary: seq-len = 30980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25824-25984 bp Zoom in on locus 1 x3 CRISPR array Location: 25824-25984 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 25824-25984 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25824-25984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQP01000012.1 Clostridioides difficile FD106 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 76046 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8644-9000 bp Zoom in on locus 1 x6 CRISPR array Location: 8644-9000 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8644-9000 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8644-9000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQP01000071.1 Clostridioides difficile FD106 DNA, sequence071, whole genome shotgun sequence

⇒Summary: seq-len = 16883 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6399-6759 bp Zoom in on locus 1 x6 CRISPR array Location: 6399-6759 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6399-6759 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6399-6759 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQP01000085.1 Clostridioides difficile FD106 DNA, sequence085, whole genome shotgun sequence

⇒Summary: seq-len = 11671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3156-3579 bp Zoom in on locus 1 x7 CRISPR array Location: 3156-3579 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3156-3579 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3156-3579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)