CRISPRone

CRISPRone report for GCA_004315665.1_ASM431566v1

♦ Seq 1: BIQQ01000002.1 Clostridioides difficile FD108 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 125100 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116886-125099 bp Zoom in on locus 1 x26 CRISPR array Location: 116886-118562 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 116886-118562 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 118746-119012 bp Gene: cd09722:cas1 Type: universal Location: 119015-119995 bp Gene: pfam01930:cas4 Type: Type-I Location: 119998-120516 bp Gene: cd09641:cas3HD Type: Type-I Location: 120564-122885 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 122896-123597 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123599-124513 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 124515-125099 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116886-118562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQQ01000074.1 Clostridioides difficile FD108 DNA, sequence074, whole genome shotgun sequence

⇒Summary: seq-len = 15934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8730-9283 bp Zoom in on locus 1 x9 CRISPR array Location: 8730-9283 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8730-9283 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8730-9283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQQ01000004.1 Clostridioides difficile FD108 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 109445 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5302-5529 bp Zoom in on locus 1 x4 CRISPR array Location: 5302-5529 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5302-5529 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5302-5529 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQQ01000023.1 Clostridioides difficile FD108 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 59530 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58944-59171 bp Zoom in on locus 1 x4 CRISPR array Location: 58944-59171 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 58944-59171 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 58944-59171 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQQ01000024.1 Clostridioides difficile FD108 DNA, sequence024, whole genome shotgun sequence

⇒Summary: seq-len = 53577 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50640-51063 bp Zoom in on locus 1 x7 CRISPR array Location: 50640-51063 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 50640-51063 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50640-51063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQQ01000056.1 Clostridioides difficile FD108 DNA, sequence056, whole genome shotgun sequence

⇒Summary: seq-len = 28062 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2999 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 2-700 bp Gene: unk Type: unknown Location: 758-1264 bp Gene: pfam01881:cas6 Type: other Location: 1270-2064 bp Gene: pfam13280:WYL Type: other Location: 2085-2999 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQQ01000105.1 Clostridioides difficile FD108 DNA, sequence105, whole genome shotgun sequence

⇒Summary: seq-len = 6781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5376-6793 bp Zoom in on locus 1 x22 CRISPR array Location: 5376-6793 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 5376-6793 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5376-6793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQQ01000037.1 Clostridioides difficile FD108 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 40730 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35337-35627 bp Zoom in on locus 1 x5 CRISPR array Location: 35337-35627 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35337-35627 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35337-35627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQQ01000026.1 Clostridioides difficile FD108 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 51848 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24983-28279 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 24983-25275 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24983-25275 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 27919-28279 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 27919-28279 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24983-25275 bp]: array | spacers
           [Locus range 27919-28279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQQ01000014.1 Clostridioides difficile FD108 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 80596 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3803-4362 bp Zoom in on locus 1 x9 CRISPR array Location: 3803-4362 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3803-4362 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3803-4362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQQ01000077.1 Clostridioides difficile FD108 DNA, sequence077, whole genome shotgun sequence

⇒Summary: seq-len = 15399 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12167-12650 bp Zoom in on locus 1 x8 CRISPR array Location: 12167-12650 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 12167-12650 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12167-12650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIQQ01000022.1 Clostridioides difficile FD108 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 60163 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28334-38066 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28334-30742 bp Gene: cd09693:cas5 Type: Type-I Location: 30769-31566 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31582-32595 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32615-34090 bp Gene: pfam01881:cas6 Type: other Location: 34095-34832 bp Gene: unk Type: unknown Location: 35146-35604 bp Gene: cas14:cas14 Type: Type-V Location: 35632-36804 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 36957-38066 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)