CRISPRone

CRISPRone report for GCA_004315685.1_ASM431568v1

♦ Seq 1: BIQR01000026.1 Clostridioides difficile FD109 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 41586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24009-24234 bp Zoom in on locus 1 x4 CRISPR array Location: 24009-24234 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24009-24234 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24009-24234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQR01000012.1 Clostridioides difficile FD109 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 63996 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-215 bp 2 Locus 2: 34783-35534 bp 3 Locus 3: 53607-54629 bp Zoom in on locus 1 x4 Zoom in on locus 2 x12 Zoom in on locus 3 x16 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 34783-35534 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 34783-35534 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 53607-54629 bp Num of repeats: 16 Spacers: s15-s29 CRISPR array Location: 53607-54629 bp Num of repeats: 16 Spacers: s15-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-215 bp]: array | spacers
           [Locus range 34783-35534 bp]: array | spacers
           [Locus range 53607-54629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQR01000041.1 Clostridioides difficile FD109 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 31702 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28211-28902 bp Zoom in on locus 1 x11 CRISPR array Location: 28211-28902 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 28211-28902 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28211-28902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQR01000002.1 Clostridioides difficile FD109 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 111348 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33469-41344 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33469-35877 bp Gene: cd09693:cas5 Type: Type-I Location: 35904-36710 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36726-37739 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 37759-39234 bp Gene: pfam01881:cas6 Type: other Location: 39239-39976 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40235-41344 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQR01000171.1 Clostridioides difficile FD109 DNA, sequence171, whole genome shotgun sequence

⇒Summary: seq-len = 3409 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137-3179 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 137-1444 bp Gene: pfam01881:cas6 Type: other Location: 1450-2244 bp Gene: pfam13280:WYL Type: other Location: 2265-3179 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQR01000151.1 Clostridioides difficile FD109 DNA, sequence151, whole genome shotgun sequence

⇒Summary: seq-len = 6213 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6211 bp Zoom in on locus 1 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-783 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 785-1699 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1701-2402 bp Gene: COG1203:cas3 Type: Type-I Location: 2413-4734 bp Gene: pfam01930:cas4 Type: Type-I Location: 4749-5300 bp Gene: cd09722:cas1 Type: universal Location: 5303-6211 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQR01000042.1 Clostridioides difficile FD109 DNA, sequence042, whole genome shotgun sequence

⇒Summary: seq-len = 31583 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-5969 bp Zoom in on locus 1 x4 x4 x3 x8 CRISPR array Location: 3-228 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3-228 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3061-3287 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 3061-3287 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 3521-3682 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 3521-3682 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 5481-5969 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 5481-5969 bp Num of repeats: 8 Spacers: s9-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-228 bp]: array | spacers
           [Locus range 3061-3287 bp]: array | spacers
           [Locus range 3521-3682 bp]: array | spacers
           [Locus range 5481-5969 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQR01000134.1 Clostridioides difficile FD109 DNA, sequence134, whole genome shotgun sequence

⇒Summary: seq-len = 8206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-1094 bp Zoom in on locus 1 x17 CRISPR array Location: 13-1094 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 13-1094 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13-1094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQR01000114.1 Clostridioides difficile FD109 DNA, sequence114, whole genome shotgun sequence

⇒Summary: seq-len = 10157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1933-2355 bp Zoom in on locus 1 x7 CRISPR array Location: 1933-2355 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1933-2355 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1933-2355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQR01000038.1 Clostridioides difficile FD109 DNA, sequence038, whole genome shotgun sequence

⇒Summary: seq-len = 34842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33346-33508 bp Zoom in on locus 1 x3 CRISPR array Location: 33346-33508 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 33346-33508 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33346-33508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQR01000003.1 Clostridioides difficile FD109 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 103512 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51120-51214 bp Zoom in on locus 1 x2 CRISPR array Location: 51120-51214 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 51120-51214 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51120-51214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIQR01000049.1 Clostridioides difficile FD109 DNA, sequence049, whole genome shotgun sequence

⇒Summary: seq-len = 29008 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7394-7886 bp Zoom in on locus 1 x8 CRISPR array Location: 7394-7886 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 7394-7886 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7394-7886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIQR01000207.1 Clostridioides difficile FD109 DNA, sequence207, whole genome shotgun sequence

⇒Summary: seq-len = 1383 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1395 bp Zoom in on locus 1 x10 Gene: cd09634:cas1 Type: universal Location: 1-315 bp Gene: cd09725:cas2 Type: universal Location: 318-584 bp CRISPR array Location: 768-1395 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 768-1395 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 768-1395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)