CRISPRone

CRISPRone report for GCA_004315825.1_ASM431582v1

♦ Seq 1: BIQY01000026.1 Clostridioides difficile FD116 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 57055 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38577-39130 bp Zoom in on locus 1 x9 CRISPR array Location: 38577-39130 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38577-39130 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38577-39130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQY01000036.1 Clostridioides difficile FD116 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 40775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35344-35634 bp Zoom in on locus 1 x5 CRISPR array Location: 35344-35634 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35344-35634 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35344-35634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQY01000107.1 Clostridioides difficile FD116 DNA, sequence107, whole genome shotgun sequence

⇒Summary: seq-len = 2106 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113-206 bp Zoom in on locus 1 x2 CRISPR array Location: 113-206 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 113-206 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113-206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQY01000007.1 Clostridioides difficile FD116 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 111718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91300-91722 bp Zoom in on locus 1 x7 CRISPR array Location: 91300-91722 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 91300-91722 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91300-91722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQY01000001.1 Clostridioides difficile FD116 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 235636 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98506-99066 bp 2 Locus 2: 174223-183955 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 98506-99066 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 98506-99066 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 174223-175332 bp Gene: cas14:cas14 Type: Type-V Location: 175485-176657 bp Gene: unk Type: unknown Location: 176685-177143 bp Gene: unk Type: unknown Location: 177291-177425 bp Gene: pfam01881:cas6 Type: other Location: 177457-178194 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 178199-179674 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 179694-180707 bp Gene: cd09693:cas5 Type: Type-I Location: 180723-181520 bp Gene: cd09641:cas3HD Type: Type-I Location: 181547-183955 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98506-99066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQY01000040.1 Clostridioides difficile FD116 DNA, sequence040, whole genome shotgun sequence

⇒Summary: seq-len = 32964 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29491-29974 bp Zoom in on locus 1 x8 CRISPR array Location: 29491-29974 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 29491-29974 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29491-29974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQY01000018.1 Clostridioides difficile FD116 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 73561 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55137-66352 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 55137-56051 bp Gene: pfam01881:cas6 Type: other Location: 56129-56866 bp Gene: unk Type: unknown Location: 56872-57378 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 57436-58722 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58724-59638 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59640-60341 bp Gene: cd09641:cas3HD Type: Type-I Location: 60352-62673 bp Gene: pfam01930:cas4 Type: Type-I Location: 62688-63239 bp Gene: cd09722:cas1 Type: universal Location: 63242-64222 bp Gene: cd09725:cas2 Type: universal Location: 64225-64491 bp CRISPR array Location: 64675-66352 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 64675-66352 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64675-66352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQY01000031.1 Clostridioides difficile FD116 DNA, sequence031, whole genome shotgun sequence

⇒Summary: seq-len = 48510 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42842-43070 bp Zoom in on locus 1 x4 CRISPR array Location: 42842-43070 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 42842-43070 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42842-43070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQY01000083.1 Clostridioides difficile FD116 DNA, sequence083, whole genome shotgun sequence

⇒Summary: seq-len = 7129 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-5791 bp Zoom in on locus 1 x6 x5 x2 CRISPR array Location: 0-349 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-349 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2992-3285 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 2992-3285 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 5696-5791 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 5696-5791 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-349 bp]: array | spacers
           [Locus range 2992-3285 bp]: array | spacers
           [Locus range 5696-5791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQY01000005.1 Clostridioides difficile FD116 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 159004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20393-20685 bp Zoom in on locus 1 x5 CRISPR array Location: 20393-20685 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 20393-20685 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20393-20685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQY01000022.1 Clostridioides difficile FD116 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 63786 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56995-58411 bp Zoom in on locus 1 x22 CRISPR array Location: 56995-58411 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56995-58411 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56995-58411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)