CRISPRone

CRISPRone report for GCA_004315845.1_ASM431584v1

♦ Seq 1: BIQZ01000013.1 Clostridioides difficile FD117 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 94963 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41533-43181 bp Zoom in on locus 1 x14 x3 CRISPR array Location: 41533-42418 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 41533-42418 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 43021-43181 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 43021-43181 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41533-42418 bp]: array | spacers
           [Locus range 43021-43181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQZ01000002.1 Clostridioides difficile FD117 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 230272 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88054-99262 bp Zoom in on locus 1 x26 CRISPR array Location: 88054-89724 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 88054-89724 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 89908-90174 bp Gene: cd09722:cas1 Type: universal Location: 90177-91157 bp Gene: pfam01930:cas4 Type: Type-I Location: 91160-91678 bp Gene: COG1203:cas3 Type: Type-I Location: 91726-94047 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 94058-94759 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 94761-95675 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 95677-97527 bp Gene: pfam01881:cas6 Type: other Location: 97533-98327 bp Gene: pfam13280:WYL Type: other Location: 98348-99262 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88054-89724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQZ01000015.1 Clostridioides difficile FD117 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 91153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43657-45066 bp Zoom in on locus 1 x22 CRISPR array Location: 43657-45066 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 43657-45066 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43657-45066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQZ01000041.1 Clostridioides difficile FD117 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 23774 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3866-5604 bp Zoom in on locus 1 x27 CRISPR array Location: 3866-5604 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 3866-5604 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3866-5604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQZ01000017.1 Clostridioides difficile FD117 DNA, sequence017, whole genome shotgun sequence

⇒Summary: seq-len = 89705 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70728-78010 bp Zoom in on locus 1 x17 CRISPR array Location: 70728-71807 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 70728-71807 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 72374-74356 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 74367-75437 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 75458-76606 bp Gene: pfam01881:cas6 Type: other Location: 76608-77372 bp Gene: cd09693:cas5 Type: Type-I Location: 77363-78010 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70728-71807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQZ01000010.1 Clostridioides difficile FD117 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 128524 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68914-76779 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 68914-70023 bp Gene: pfam01881:cas6 Type: other Location: 70281-71018 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71023-72498 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72518-73531 bp Gene: cd09693:cas5 Type: Type-I Location: 73547-74344 bp Gene: cd09641:cas3HD Type: Type-I Location: 74371-76779 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQZ01000001.1 Clostridioides difficile FD117 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 465591 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91133-91488 bp 2 Locus 2: 297083-297702 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 91133-91488 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91133-91488 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 297083-297702 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 297083-297702 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91133-91488 bp]: array | spacers
           [Locus range 297083-297702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQZ01000031.1 Clostridioides difficile FD117 DNA, sequence031, whole genome shotgun sequence

⇒Summary: seq-len = 39614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38730-39287 bp Zoom in on locus 1 x9 CRISPR array Location: 38730-39287 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38730-39287 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38730-39287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQZ01000016.1 Clostridioides difficile FD117 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 90577 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86385-87466 bp Zoom in on locus 1 x17 CRISPR array Location: 86385-87466 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 86385-87466 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86385-87466 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)