CRISPRone

CRISPRone report for GCA_004315905.1_ASM431590v1

♦ Seq 1: BIRC01000113.1 Clostridioides difficile FD120 DNA, sequence113, whole genome shotgun sequence

⇒Summary: seq-len = 5748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5188-5415 bp Zoom in on locus 1 x4 CRISPR array Location: 5188-5415 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5188-5415 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5188-5415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIRC01000035.1 Clostridioides difficile FD120 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 39586 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17650-27382 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17650-20058 bp Gene: cd09693:cas5 Type: Type-I Location: 20085-20882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20898-21911 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21931-23406 bp Gene: pfam01881:cas6 Type: other Location: 23411-24148 bp Gene: unk Type: unknown Location: 24462-24920 bp Gene: cas14:cas14 Type: Type-V Location: 24948-26120 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26273-27382 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIRC01000039.1 Clostridioides difficile FD120 DNA, sequence039, whole genome shotgun sequence

⇒Summary: seq-len = 37881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32391-32814 bp Zoom in on locus 1 x7 CRISPR array Location: 32391-32814 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 32391-32814 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32391-32814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIRC01000003.1 Clostridioides difficile FD120 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 138079 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133602-134162 bp Zoom in on locus 1 x9 CRISPR array Location: 133602-134162 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 133602-134162 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133602-134162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIRC01000010.1 Clostridioides difficile FD120 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 82199 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78787-79270 bp Zoom in on locus 1 x8 CRISPR array Location: 78787-79270 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 78787-79270 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78787-79270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIRC01000104.1 Clostridioides difficile FD120 DNA, sequence104, whole genome shotgun sequence

⇒Summary: seq-len = 8706 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 950-6752 bp Zoom in on locus 1 x2 x5 x6 CRISPR array Location: 950-1044 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 950-1044 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3456-3748 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 3456-3748 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6392-6752 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 6392-6752 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 950-1044 bp]: array | spacers
           [Locus range 3456-3748 bp]: array | spacers
           [Locus range 6392-6752 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIRC01000001.1 Clostridioides difficile FD120 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 210131 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189550-189843 bp Zoom in on locus 1 x5 CRISPR array Location: 189550-189843 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189550-189843 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189550-189843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIRC01000014.1 Clostridioides difficile FD120 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 73619 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7042-18256 bp Zoom in on locus 1 x26 CRISPR array Location: 7042-8718 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 7042-8718 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 8902-9168 bp Gene: cd09722:cas1 Type: universal Location: 9171-10151 bp Gene: pfam01930:cas4 Type: Type-I Location: 10154-10672 bp Gene: cd09641:cas3HD Type: Type-I Location: 10720-13041 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13052-13753 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13755-14669 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14671-15957 bp Gene: unk Type: unknown Location: 16015-16521 bp Gene: pfam01881:cas6 Type: other Location: 16527-17321 bp Gene: pfam13280:WYL Type: other Location: 17342-18256 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7042-8718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIRC01000040.1 Clostridioides difficile FD120 DNA, sequence040, whole genome shotgun sequence

⇒Summary: seq-len = 35740 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6620-7174 bp Zoom in on locus 1 x9 CRISPR array Location: 6620-7174 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6620-7174 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6620-7174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIRC01000018.1 Clostridioides difficile FD120 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 60901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25158-25447 bp Zoom in on locus 1 x5 CRISPR array Location: 25158-25447 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25158-25447 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25158-25447 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIRC01000024.1 Clostridioides difficile FD120 DNA, sequence024, whole genome shotgun sequence

⇒Summary: seq-len = 49945 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1406 bp Zoom in on locus 1 x22 CRISPR array Location: 0-1406 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 0-1406 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)