CRISPRone

CRISPRone report for GCA_004315985.1_ASM431598v1

♦ Seq 1: BIRG01000018.1 Clostridioides difficile FD124 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 68237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-5369 bp Zoom in on locus 1 x5 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-5369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIRG01000124.1 Clostridioides difficile FD124 DNA, sequence124, whole genome shotgun sequence

⇒Summary: seq-len = 1887 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-606 bp Zoom in on locus 1 x10 CRISPR array Location: 0-606 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-606 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIRG01000002.1 Clostridioides difficile FD124 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 150993 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132941-144997 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 132941-133636 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 133648-135387 bp Gene: pfam05107:cas7b Type: Type-I Location: 135380-136369 bp Gene: cd09693:cas5 Type: Type-I Location: 136371-137111 bp Gene: cd09641:cas3HD Type: Type-I Location: 137135-139693 bp CRISPR array Location: 139883-142885 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 139883-142885 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 142969-143463 bp Gene: cd09722:cas1 Type: universal Location: 143489-144496 bp Gene: cd09725:cas2 Type: universal Location: 144707-144997 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 139883-142885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIRG01000035.1 Clostridioides difficile FD124 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 45052 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIRG01000001.1 Clostridioides difficile FD124 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 209144 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17714-25579 bp 2 Locus 2: 98827-99384 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 17714-20122 bp Gene: cd09693:cas5 Type: Type-I Location: 20149-20946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20962-21975 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21995-23470 bp Gene: pfam01881:cas6 Type: other Location: 23475-24212 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 24470-25579 bp CRISPR array Location: 98827-99384 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 98827-99384 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98827-99384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIRG01000015.1 Clostridioides difficile FD124 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 75723 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2152-2314 bp Zoom in on locus 1 x3 CRISPR array Location: 2152-2314 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2152-2314 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2152-2314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIRG01000026.1 Clostridioides difficile FD124 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 52228 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49803-50223 bp Zoom in on locus 1 x7 CRISPR array Location: 49803-50223 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 49803-50223 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 49803-50223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)