CRISPRone

CRISPRone report for GCA_004316045.1_ASM431604v1

♦ Seq 1: BIRJ01000099.1 Clostridioides difficile FD127 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 3297 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1591-1818 bp Zoom in on locus 1 x4 CRISPR array Location: 1591-1818 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1591-1818 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1591-1818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIRJ01000114.1 Clostridioides difficile FD127 DNA, sequence114, whole genome shotgun sequence

⇒Summary: seq-len = 1190 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 927-1021 bp Zoom in on locus 1 x2 CRISPR array Location: 927-1021 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 927-1021 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 927-1021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIRJ01000033.1 Clostridioides difficile FD127 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 38899 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2615-3099 bp Zoom in on locus 1 x8 CRISPR array Location: 2615-3099 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2615-3099 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2615-3099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIRJ01000011.1 Clostridioides difficile FD127 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 101230 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56575-57926 bp Zoom in on locus 1 x21 CRISPR array Location: 56575-57926 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 56575-57926 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56575-57926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIRJ01000004.1 Clostridioides difficile FD127 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 166687 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64072-75286 bp Zoom in on locus 1 x26 CRISPR array Location: 64072-65748 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 64072-65748 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 65932-66198 bp Gene: cd09722:cas1 Type: universal Location: 66201-67181 bp Gene: pfam01930:cas4 Type: Type-I Location: 67184-67702 bp Gene: cd09641:cas3HD Type: Type-I Location: 67750-70071 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 70082-70783 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70785-71699 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 71701-72987 bp Gene: unk Type: unknown Location: 73045-73551 bp Gene: pfam01881:cas6 Type: other Location: 73557-74351 bp Gene: pfam13280:WYL Type: other Location: 74372-75286 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64072-65748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIRJ01000003.1 Clostridioides difficile FD127 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 180065 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84481-84771 bp Zoom in on locus 1 x5 CRISPR array Location: 84481-84771 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 84481-84771 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84481-84771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIRJ01000002.1 Clostridioides difficile FD127 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 219558 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189743-190036 bp 2 Locus 2: 213946-217243 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 189743-190036 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189743-190036 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 213946-214307 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 213946-214307 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 216950-217243 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 216950-217243 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189743-190036 bp]: array | spacers
           [Locus range 213946-214307 bp]: array | spacers
           [Locus range 216950-217243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIRJ01000026.1 Clostridioides difficile FD127 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 47153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4097-4590 bp Zoom in on locus 1 x8 CRISPR array Location: 4097-4590 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4097-4590 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4097-4590 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIRJ01000030.1 Clostridioides difficile FD127 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 41880 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2873-3427 bp Zoom in on locus 1 x9 CRISPR array Location: 2873-3427 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2873-3427 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2873-3427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIRJ01000015.1 Clostridioides difficile FD127 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 65970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42062-42352 bp Zoom in on locus 1 x5 CRISPR array Location: 42062-42352 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 42062-42352 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42062-42352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIRJ01000012.1 Clostridioides difficile FD127 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 98705 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17650-27382 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17650-20058 bp Gene: cd09693:cas5 Type: Type-I Location: 20085-20882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20898-21911 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21931-23406 bp Gene: pfam01881:cas6 Type: other Location: 23411-24148 bp Gene: unk Type: unknown Location: 24462-24920 bp Gene: cas14:cas14 Type: Type-V Location: 24948-26120 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26273-27382 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)