CRISPRone

CRISPRone report for GCA_004316225.1_ASM431622v1

♦ Seq 1: BIRS01000085.1 Clostridioides difficile FD136 DNA, sequence085, whole genome shotgun sequence

⇒Summary: seq-len = 8715 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1940-2167 bp Zoom in on locus 1 x4 CRISPR array Location: 1940-2167 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1940-2167 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1940-2167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIRS01000003.1 Clostridioides difficile FD136 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 153654 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65444-73765 bp 2 Locus 2: 147032-147389 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 65444-67852 bp Gene: cd09693:cas5 Type: Type-I Location: 67879-68676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68692-69708 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 69728-71203 bp Gene: pfam01881:cas6 Type: other Location: 71208-71945 bp Gene: unk Type: unknown Location: 72046-72222 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72656-73765 bp CRISPR array Location: 147032-147389 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 147032-147389 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 147032-147389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIRS01000004.1 Clostridioides difficile FD136 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 151034 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54912-65828 bp Zoom in on locus 1 x22 Gene: pfam13280:WYL Type: other Location: 54912-55799 bp Gene: pfam01881:cas6 Type: other Location: 55877-56614 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56620-58470 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58472-59386 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59388-60089 bp Gene: COG1203:cas3 Type: Type-I Location: 60100-62421 bp Gene: pfam01930:cas4 Type: Type-I Location: 62436-62987 bp Gene: cd09722:cas1 Type: universal Location: 62990-63970 bp Gene: cd09725:cas2 Type: universal Location: 63973-64239 bp CRISPR array Location: 64423-65828 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 64423-65828 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64423-65828 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIRS01000049.1 Clostridioides difficile FD136 DNA, sequence049, whole genome shotgun sequence

⇒Summary: seq-len = 24741 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18696-18857 bp Zoom in on locus 1 x3 CRISPR array Location: 18696-18857 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18696-18857 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18696-18857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIRS01000043.1 Clostridioides difficile FD136 DNA, sequence043, whole genome shotgun sequence

⇒Summary: seq-len = 32413 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3151-3908 bp Zoom in on locus 1 x12 CRISPR array Location: 3151-3908 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3151-3908 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3151-3908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIRS01000002.1 Clostridioides difficile FD136 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 210775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166858-166951 bp Zoom in on locus 1 x2 CRISPR array Location: 166858-166951 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 166858-166951 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 166858-166951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIRS01000011.1 Clostridioides difficile FD136 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 84486 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3263-3880 bp Zoom in on locus 1 x10 CRISPR array Location: 3263-3880 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3263-3880 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3263-3880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)