CRISPRone

CRISPRone report for GCA_004316305.1_ASM431630v1

♦ Seq 1: BIRW01000022.1 Clostridioides difficile FD140 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 76897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45312-45673 bp Zoom in on locus 1 x6 CRISPR array Location: 45312-45673 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45312-45673 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45312-45673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIRW01000007.1 Clostridioides difficile FD140 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 126229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27987-28343 bp Zoom in on locus 1 x6 CRISPR array Location: 27987-28343 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 27987-28343 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27987-28343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIRW01000011.1 Clostridioides difficile FD140 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 120723 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46288-50165 bp Zoom in on locus 1 x2 x6 x14 x2 CRISPR array Location: 46288-46381 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 46288-46381 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 46442-46800 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 46442-46800 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 47402-48289 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 47402-48289 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 50070-50165 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 50070-50165 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46288-46381 bp]: array | spacers
           [Locus range 46442-46800 bp]: array | spacers
           [Locus range 47402-48289 bp]: array | spacers
           [Locus range 50070-50165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIRW01000010.1 Clostridioides difficile FD140 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 120905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28834-28995 bp Zoom in on locus 1 x3 CRISPR array Location: 28834-28995 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28834-28995 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28834-28995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIRW01000051.1 Clostridioides difficile FD140 DNA, sequence051, whole genome shotgun sequence

⇒Summary: seq-len = 18491 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-606 bp Zoom in on locus 1 x10 CRISPR array Location: 0-606 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-606 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIRW01000018.1 Clostridioides difficile FD140 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 95302 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33799-43522 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33799-36207 bp Gene: cd09693:cas5 Type: Type-I Location: 36234-37031 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37047-38060 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38080-39546 bp Gene: pfam01881:cas6 Type: other Location: 39551-40288 bp Gene: unk Type: unknown Location: 40602-41060 bp Gene: cas14:cas14 Type: Type-V Location: 41088-42260 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 42413-43522 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)