CRISPRone

CRISPRone report for GCA_004316385.1_ASM431638v1

♦ Seq 1: BISA01000010.1 Clostridioides difficile FD144 DNA, sequence10, whole genome shotgun sequence

⇒Summary: seq-len = 146152 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35410-35959 bp Zoom in on locus 1 x9 CRISPR array Location: 35410-35959 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 35410-35959 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35410-35959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISA01000014.1 Clostridioides difficile FD144 DNA, sequence14, whole genome shotgun sequence

⇒Summary: seq-len = 128941 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISA01000004.1 Clostridioides difficile FD144 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 214244 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99058-111114 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 99058-99348 bp Gene: cd09722:cas1 Type: universal Location: 99559-100566 bp Gene: pfam01930:cas4 Type: Type-I Location: 100592-101086 bp CRISPR array Location: 101171-104172 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 101171-104172 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 104362-106920 bp Gene: cd09693:cas5 Type: Type-I Location: 106944-107684 bp Gene: pfam05107:cas7b Type: Type-I Location: 107686-108675 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 108668-110407 bp Gene: cd09652:cas6 Type: other Location: 110419-111114 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 101171-104172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISA01000033.1 Clostridioides difficile FD144 DNA, sequence33, whole genome shotgun sequence

⇒Summary: seq-len = 25204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5410-5571 bp Zoom in on locus 1 x3 CRISPR array Location: 5410-5571 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5410-5571 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5410-5571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISA01000002.1 Clostridioides difficile FD144 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 252842 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122490-122585 bp 2 Locus 2: 232868-233288 bp Zoom in on locus 1 x2 Zoom in on locus 2 x7 CRISPR array Location: 122490-122585 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 122490-122585 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 232868-233288 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 232868-233288 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122490-122585 bp]: array | spacers
           [Locus range 232868-233288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISA01000005.1 Clostridioides difficile FD144 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 206263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 202170-202331 bp Zoom in on locus 1 x3 CRISPR array Location: 202170-202331 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 202170-202331 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 202170-202331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISA01000030.1 Clostridioides difficile FD144 DNA, sequence30, whole genome shotgun sequence

⇒Summary: seq-len = 38962 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISA01000006.1 Clostridioides difficile FD144 DNA, sequence06, whole genome shotgun sequence

⇒Summary: seq-len = 192365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2481-2773 bp Zoom in on locus 1 x5 CRISPR array Location: 2481-2773 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2481-2773 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2481-2773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)