CRISPRone

CRISPRone report for GCA_004316405.1_ASM431640v1

♦ Seq 1: BISB01000075.1 Clostridioides difficile FD145 DNA, sequence75, whole genome shotgun sequence

⇒Summary: seq-len = 4979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1094-1320 bp Zoom in on locus 1 x4 CRISPR array Location: 1094-1320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1094-1320 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1094-1320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISB01000005.1 Clostridioides difficile FD145 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 166991 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86134-87282 bp Zoom in on locus 1 x18 CRISPR array Location: 86134-87282 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 86134-87282 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86134-87282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISB01000016.1 Clostridioides difficile FD145 DNA, sequence16, whole genome shotgun sequence

⇒Summary: seq-len = 85246 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10192-10550 bp Zoom in on locus 1 x6 CRISPR array Location: 10192-10550 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10192-10550 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10192-10550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISB01000037.1 Clostridioides difficile FD145 DNA, sequence37, whole genome shotgun sequence

⇒Summary: seq-len = 42435 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38705-39396 bp Zoom in on locus 1 x11 CRISPR array Location: 38705-39396 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 38705-39396 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38705-39396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISB01000001.1 Clostridioides difficile FD145 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 216638 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91588-92146 bp Zoom in on locus 1 x9 CRISPR array Location: 91588-92146 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91588-92146 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91588-92146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISB01000017.1 Clostridioides difficile FD145 DNA, sequence17, whole genome shotgun sequence

⇒Summary: seq-len = 84676 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81035-81651 bp Zoom in on locus 1 x10 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81035-81651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISB01000002.1 Clostridioides difficile FD145 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 210785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166952-167045 bp Zoom in on locus 1 x2 CRISPR array Location: 166952-167045 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 166952-167045 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 166952-167045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISB01000006.1 Clostridioides difficile FD145 DNA, sequence06, whole genome shotgun sequence

⇒Summary: seq-len = 152279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110201-110361 bp Zoom in on locus 1 x3 CRISPR array Location: 110201-110361 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110201-110361 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110201-110361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISB01000015.1 Clostridioides difficile FD145 DNA, sequence15, whole genome shotgun sequence

⇒Summary: seq-len = 92440 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54976-65697 bp Zoom in on locus 1 x19 Gene: pfam13280:WYL Type: other Location: 54976-55863 bp Gene: pfam01881:cas6 Type: other Location: 55941-56678 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56684-58534 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58536-59450 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59452-60153 bp Gene: COG1203:cas3 Type: Type-I Location: 60164-62485 bp Gene: pfam01930:cas4 Type: Type-I Location: 62500-63051 bp Gene: cd09722:cas1 Type: universal Location: 63054-64034 bp Gene: cd09725:cas2 Type: universal Location: 64037-64303 bp CRISPR array Location: 64487-65697 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 64487-65697 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64487-65697 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISB01000046.1 Clostridioides difficile FD145 DNA, sequence46, whole genome shotgun sequence

⇒Summary: seq-len = 24438 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17859-24360 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17859-20267 bp Gene: cd09693:cas5 Type: Type-I Location: 20294-21091 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21107-22123 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22143-23618 bp Gene: pfam01881:cas6 Type: other Location: 23623-24360 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)