CRISPRone

CRISPRone report for GCA_004316485.1_ASM431648v1

♦ Seq 1: BISF01000001.1 Clostridioides difficile FD149 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 318439 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55003-66047 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 55003-55890 bp Gene: pfam01881:cas6 Type: other Location: 55968-56705 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56711-58561 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58563-59477 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59479-60180 bp Gene: COG1203:cas3 Type: Type-I Location: 60191-62512 bp Gene: pfam01930:cas4 Type: Type-I Location: 62527-63078 bp Gene: cd09722:cas1 Type: universal Location: 63081-64061 bp Gene: cd09725:cas2 Type: universal Location: 64064-64330 bp CRISPR array Location: 64514-66047 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 64514-66047 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64514-66047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISF01000026.1 Clostridioides difficile FD149 DNA, sequence26, whole genome shotgun sequence

⇒Summary: seq-len = 63722 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45121-45877 bp Zoom in on locus 1 x12 CRISPR array Location: 45121-45877 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 45121-45877 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45121-45877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISF01000003.1 Clostridioides difficile FD149 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 199503 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44202-44560 bp 2 Locus 2: 117826-126147 bp Zoom in on locus 1 x6 Zoom in on locus 2 CRISPR array Location: 44202-44560 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44202-44560 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117826-118935 bp Gene: unk Type: unknown Location: 119369-119545 bp Gene: pfam01881:cas6 Type: other Location: 119646-120383 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120388-121863 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121883-122899 bp Gene: cd09693:cas5 Type: Type-I Location: 122915-123712 bp Gene: cd09641:cas3HD Type: Type-I Location: 123739-126147 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44202-44560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISF01000010.1 Clostridioides difficile FD149 DNA, sequence10, whole genome shotgun sequence

⇒Summary: seq-len = 119984 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41960-42121 bp Zoom in on locus 1 x3 CRISPR array Location: 41960-42121 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41960-42121 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41960-42121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISF01000031.1 Clostridioides difficile FD149 DNA, sequence31, whole genome shotgun sequence

⇒Summary: seq-len = 53943 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25564-25785 bp Zoom in on locus 1 x4 CRISPR array Location: 25564-25785 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 25564-25785 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25564-25785 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISF01000029.1 Clostridioides difficile FD149 DNA, sequence29, whole genome shotgun sequence

⇒Summary: seq-len = 56087 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12616-12709 bp Zoom in on locus 1 x2 CRISPR array Location: 12616-12709 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12616-12709 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12616-12709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISF01000028.1 Clostridioides difficile FD149 DNA, sequence28, whole genome shotgun sequence

⇒Summary: seq-len = 56490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52676-53292 bp Zoom in on locus 1 x10 CRISPR array Location: 52676-53292 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 52676-53292 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52676-53292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISF01000046.1 Clostridioides difficile FD149 DNA, sequence46, whole genome shotgun sequence

⇒Summary: seq-len = 22341 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17935-18952 bp Zoom in on locus 1 x16 CRISPR array Location: 17935-18952 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 17935-18952 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17935-18952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISF01000005.1 Clostridioides difficile FD149 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 185748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7345-8493 bp Zoom in on locus 1 x18 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7345-8493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)