CRISPRone

CRISPRone report for GCA_004316505.1_ASM431650v1

♦ Seq 1: BISG01000002.1 Clostridioides difficile FD151 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 144842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102027-102585 bp Zoom in on locus 1 x9 CRISPR array Location: 102027-102585 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102027-102585 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102027-102585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISG01000036.1 Clostridioides difficile FD151 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 40095 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35414-36164 bp Zoom in on locus 1 x12 CRISPR array Location: 35414-36164 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 35414-36164 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35414-36164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISG01000062.1 Clostridioides difficile FD151 DNA, sequence062, whole genome shotgun sequence

⇒Summary: seq-len = 23753 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11374-23430 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 11374-12069 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 12081-13820 bp Gene: pfam05107:cas7b Type: Type-I Location: 13813-14802 bp Gene: cd09693:cas5 Type: Type-I Location: 14804-15544 bp Gene: cd09641:cas3HD Type: Type-I Location: 15568-18126 bp CRISPR array Location: 18316-21318 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 18316-21318 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 21402-21896 bp Gene: cd09722:cas1 Type: universal Location: 21922-22929 bp Gene: cd09725:cas2 Type: universal Location: 23140-23430 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18316-21318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISG01000066.1 Clostridioides difficile FD151 DNA, sequence066, whole genome shotgun sequence

⇒Summary: seq-len = 20820 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1963-2124 bp Zoom in on locus 1 x3 CRISPR array Location: 1963-2124 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1963-2124 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1963-2124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISG01000084.1 Clostridioides difficile FD151 DNA, sequence084, whole genome shotgun sequence

⇒Summary: seq-len = 15185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4515-4807 bp Zoom in on locus 1 x5 CRISPR array Location: 4515-4807 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4515-4807 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4515-4807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISG01000030.1 Clostridioides difficile FD151 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 45380 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6620-6716 bp Zoom in on locus 1 x2 CRISPR array Location: 6620-6716 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6620-6716 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6620-6716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISG01000007.1 Clostridioides difficile FD151 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 90620 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISG01000059.1 Clostridioides difficile FD151 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 24594 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8201-8621 bp Zoom in on locus 1 x7 CRISPR array Location: 8201-8621 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 8201-8621 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8201-8621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)