CRISPRone

CRISPRone report for GCA_004316525.1_ASM431652v1

♦ Seq 1: BISH01000137.1 Clostridioides difficile FD152 DNA, sequence137, whole genome shotgun sequence

⇒Summary: seq-len = 9808 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89-9789 bp Zoom in on locus 1 x3 Gene: pfam13280:WYL Type: other Location: 89-1003 bp Gene: pfam01881:cas6 Type: other Location: 1081-1818 bp Gene: unk Type: unknown Location: 1824-2330 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2388-3674 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3676-4590 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4592-5293 bp Gene: cd09641:cas3HD Type: Type-I Location: 5304-7625 bp Gene: pfam01930:cas4 Type: Type-I Location: 7640-8191 bp Gene: cd09722:cas1 Type: universal Location: 8194-9174 bp Gene: cd09725:cas2 Type: universal Location: 9177-9443 bp CRISPR array Location: 9627-9789 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9627-9789 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9627-9789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISH01000021.1 Clostridioides difficile FD152 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 25658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5069-5491 bp Zoom in on locus 1 x7 CRISPR array Location: 5069-5491 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5069-5491 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5069-5491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISH01000380.1 Clostridioides difficile FD152 DNA, sequence380, whole genome shotgun sequence

⇒Summary: seq-len = 1695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1354-1707 bp Zoom in on locus 1 x6 CRISPR array Location: 1354-1707 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1354-1707 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1354-1707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISH01000215.1 Clostridioides difficile FD152 DNA, sequence215, whole genome shotgun sequence

⇒Summary: seq-len = 6179 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5424-5984 bp Zoom in on locus 1 x9 CRISPR array Location: 5424-5984 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5424-5984 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5424-5984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISH01000355.1 Clostridioides difficile FD152 DNA, sequence355, whole genome shotgun sequence

⇒Summary: seq-len = 2147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1590-1817 bp Zoom in on locus 1 x4 CRISPR array Location: 1590-1817 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1590-1817 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1590-1817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISH01000072.1 Clostridioides difficile FD152 DNA, sequence072, whole genome shotgun sequence

⇒Summary: seq-len = 16984 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13767-16998 bp Zoom in on locus 1 x6 x4 CRISPR array Location: 13767-14128 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 13767-14128 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 16771-16998 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 16771-16998 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13767-14128 bp]: array | spacers
           [Locus range 16771-16998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISH01000059.1 Clostridioides difficile FD152 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 18680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1887-1982 bp Zoom in on locus 1 x2 CRISPR array Location: 1887-1982 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1887-1982 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1887-1982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISH01000396.1 Clostridioides difficile FD152 DNA, sequence396, whole genome shotgun sequence

⇒Summary: seq-len = 1436 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284-1436 bp Zoom in on locus 1 x18 CRISPR array Location: 284-1436 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 284-1436 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284-1436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISH01000252.1 Clostridioides difficile FD152 DNA, sequence252, whole genome shotgun sequence

⇒Summary: seq-len = 5018 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-93 bp Zoom in on locus 1 x2 CRISPR array Location: 0-93 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-93 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-93 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISH01000007.1 Clostridioides difficile FD152 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 43905 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37291-43787 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 37291-39270 bp Gene: cd09641:cas3HD Type: Type-I Location: 39308-39697 bp Gene: cd09693:cas5 Type: Type-I Location: 39724-40521 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 40537-41550 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 41570-43045 bp Gene: pfam01881:cas6 Type: other Location: 43050-43787 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BISH01000233.1 Clostridioides difficile FD152 DNA, sequence233, whole genome shotgun sequence

⇒Summary: seq-len = 5515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4433-5515 bp Zoom in on locus 1 x17 CRISPR array Location: 4433-5515 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 4433-5515 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4433-5515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BISH01000006.1 Clostridioides difficile FD152 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 43963 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23760-24049 bp Zoom in on locus 1 x5 CRISPR array Location: 23760-24049 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23760-24049 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23760-24049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BISH01000282.1 Clostridioides difficile FD152 DNA, sequence282, whole genome shotgun sequence

⇒Summary: seq-len = 4163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 565-1118 bp Zoom in on locus 1 x9 CRISPR array Location: 565-1118 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 565-1118 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 565-1118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)