CRISPRone

CRISPRone report for GCA_004316565.1_ASM431656v1

♦ Seq 1: BISJ01000023.1 Clostridioides difficile FD154 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 56252 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20041-27906 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 20041-21150 bp Gene: pfam01881:cas6 Type: other Location: 21408-22145 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22150-23625 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23645-24658 bp Gene: cd09693:cas5 Type: Type-I Location: 24674-25471 bp Gene: cd09641:cas3HD Type: Type-I Location: 25498-27906 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISJ01000068.1 Clostridioides difficile FD154 DNA, sequence068, whole genome shotgun sequence

⇒Summary: seq-len = 18570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17937-18297 bp Zoom in on locus 1 x6 CRISPR array Location: 17937-18297 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17937-18297 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17937-18297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISJ01000079.1 Clostridioides difficile FD154 DNA, sequence079, whole genome shotgun sequence

⇒Summary: seq-len = 13007 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7672-7834 bp Zoom in on locus 1 x3 CRISPR array Location: 7672-7834 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7672-7834 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7672-7834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISJ01000093.1 Clostridioides difficile FD154 DNA, sequence093, whole genome shotgun sequence

⇒Summary: seq-len = 8754 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-8752 bp Zoom in on locus 1 x45 CRISPR array Location: 92-3027 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 92-3027 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09641:cas3HD Type: Type-I Location: 3217-5775 bp Gene: cd09693:cas5 Type: Type-I Location: 5799-6539 bp Gene: pfam05107:cas7b Type: Type-I Location: 6541-7530 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 7523-8752 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 92-3027 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISJ01000004.1 Clostridioides difficile FD154 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 129925 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3989-4480 bp Zoom in on locus 1 x8 CRISPR array Location: 3989-4480 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3989-4480 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3989-4480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISJ01000129.1 Clostridioides difficile FD154 DNA, sequence129, whole genome shotgun sequence

⇒Summary: seq-len = 1371 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1235 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-528 bp Gene: cd09652:cas6 Type: other Location: 540-1235 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISJ01000092.1 Clostridioides difficile FD154 DNA, sequence092, whole genome shotgun sequence

⇒Summary: seq-len = 9148 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5045-8658 bp Zoom in on locus 1 x13 x8 CRISPR array Location: 5045-5867 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5045-5867 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 8171-8658 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 8171-8658 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5045-5867 bp]: array | spacers
           [Locus range 8171-8658 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISJ01000059.1 Clostridioides difficile FD154 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 21837 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18651-18877 bp Zoom in on locus 1 x4 CRISPR array Location: 18651-18877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18651-18877 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18651-18877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISJ01000019.1 Clostridioides difficile FD154 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 57044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50653-51074 bp Zoom in on locus 1 x7 CRISPR array Location: 50653-51074 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 50653-51074 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50653-51074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISJ01000118.1 Clostridioides difficile FD154 DNA, sequence118, whole genome shotgun sequence

⇒Summary: seq-len = 2213 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47-2075 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 47-541 bp Gene: cd09722:cas1 Type: universal Location: 567-1574 bp Gene: cd09725:cas2 Type: universal Location: 1785-2075 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BISJ01000045.1 Clostridioides difficile FD154 DNA, sequence045, whole genome shotgun sequence

⇒Summary: seq-len = 28183 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 625-918 bp Zoom in on locus 1 x5 CRISPR array Location: 625-918 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 625-918 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 625-918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BISJ01000026.1 Clostridioides difficile FD154 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 52360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51358-52372 bp Zoom in on locus 1 x16 CRISPR array Location: 51358-52372 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 51358-52372 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51358-52372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)