CRISPRone

CRISPRone report for GCA_004316585.1_ASM431658v1

♦ Seq 1: BISK01000133.1 Clostridioides difficile FD155 DNA, sequence133, whole genome shotgun sequence

⇒Summary: seq-len = 8534 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7121-8525 bp Zoom in on locus 1 x22 CRISPR array Location: 7121-8525 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 7121-8525 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7121-8525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISK01000179.1 Clostridioides difficile FD155 DNA, sequence179, whole genome shotgun sequence

⇒Summary: seq-len = 4638 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4293-4650 bp Zoom in on locus 1 x6 CRISPR array Location: 4293-4650 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4293-4650 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4293-4650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISK01000015.1 Clostridioides difficile FD155 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 50159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49802-50163 bp Zoom in on locus 1 x6 CRISPR array Location: 49802-50163 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 49802-50163 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 49802-50163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISK01000126.1 Clostridioides difficile FD155 DNA, sequence126, whole genome shotgun sequence

⇒Summary: seq-len = 9642 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195-9549 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 195-461 bp Gene: cd09722:cas1 Type: universal Location: 464-1444 bp Gene: pfam01930:cas4 Type: Type-I Location: 1447-1965 bp Gene: COG1203:cas3 Type: Type-I Location: 2013-4334 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4345-5046 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5048-5962 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5964-7814 bp Gene: pfam01881:cas6 Type: other Location: 7820-8614 bp Gene: pfam13280:WYL Type: other Location: 8635-9549 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISK01000189.1 Clostridioides difficile FD155 DNA, sequence189, whole genome shotgun sequence

⇒Summary: seq-len = 3697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3612-3707 bp Zoom in on locus 1 x2 CRISPR array Location: 3612-3707 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3612-3707 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3612-3707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISK01000109.1 Clostridioides difficile FD155 DNA, sequence109, whole genome shotgun sequence

⇒Summary: seq-len = 12642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8666-9282 bp Zoom in on locus 1 x10 CRISPR array Location: 8666-9282 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8666-9282 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8666-9282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISK01000181.1 Clostridioides difficile FD155 DNA, sequence181, whole genome shotgun sequence

⇒Summary: seq-len = 4518 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-4515 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-401 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 406-1881 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1901-2917 bp Gene: cd09693:cas5 Type: Type-I Location: 2933-3730 bp Gene: cd09641:cas3HD Type: Type-I Location: 3757-4515 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISK01000082.1 Clostridioides difficile FD155 DNA, sequence082, whole genome shotgun sequence

⇒Summary: seq-len = 17842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6014-6175 bp Zoom in on locus 1 x3 CRISPR array Location: 6014-6175 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6014-6175 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6014-6175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)