CRISPRone

CRISPRone report for GCA_004316665.1_ASM431666v1

♦ Seq 1: BISO01000074.1 Clostridioides difficile FD159 DNA, sequence074, whole genome shotgun sequence

⇒Summary: seq-len = 19042 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15899-16388 bp Zoom in on locus 1 x8 CRISPR array Location: 15899-16388 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 15899-16388 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15899-16388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISO01000122.1 Clostridioides difficile FD159 DNA, sequence122, whole genome shotgun sequence

⇒Summary: seq-len = 5735 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-360 bp Zoom in on locus 1 x6 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISO01000103.1 Clostridioides difficile FD159 DNA, sequence103, whole genome shotgun sequence

⇒Summary: seq-len = 8741 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5676-6033 bp Zoom in on locus 1 x6 CRISPR array Location: 5676-6033 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5676-6033 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5676-6033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISO01000012.1 Clostridioides difficile FD159 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 65648 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51791-61514 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51791-54199 bp Gene: cd09693:cas5 Type: Type-I Location: 54226-55023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55039-56052 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56072-57538 bp Gene: pfam01881:cas6 Type: other Location: 57543-58280 bp Gene: unk Type: unknown Location: 58594-59052 bp Gene: cas14:cas14 Type: Type-V Location: 59080-60252 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60405-61514 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISO01000045.1 Clostridioides difficile FD159 DNA, sequence045, whole genome shotgun sequence

⇒Summary: seq-len = 31915 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28960-29121 bp Zoom in on locus 1 x3 CRISPR array Location: 28960-29121 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28960-29121 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28960-29121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISO01000013.1 Clostridioides difficile FD159 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 63509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45005-45624 bp Zoom in on locus 1 x10 CRISPR array Location: 45005-45624 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45005-45624 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45005-45624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISO01000153.1 Clostridioides difficile FD159 DNA, sequence153, whole genome shotgun sequence

⇒Summary: seq-len = 2593 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2030-2124 bp Zoom in on locus 1 x2 CRISPR array Location: 2030-2124 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2030-2124 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2030-2124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)