CRISPRone

CRISPRone report for GCA_004316705.1_ASM431670v1

♦ Seq 1: BISQ01000201.1 Clostridioides difficile FD161 DNA, sequence201, whole genome shotgun sequence

⇒Summary: seq-len = 3714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3629-3724 bp Zoom in on locus 1 x2 CRISPR array Location: 3629-3724 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3629-3724 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3629-3724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISQ01000012.1 Clostridioides difficile FD161 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 52978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48412-49561 bp Zoom in on locus 1 x18 CRISPR array Location: 48412-49561 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 48412-49561 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48412-49561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISQ01000004.1 Clostridioides difficile FD161 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 70545 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35557-45586 bp Zoom in on locus 1 x8 CRISPR array Location: 35557-36048 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 35557-36048 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 36232-36498 bp Gene: cd09722:cas1 Type: universal Location: 36501-37481 bp Gene: pfam01930:cas4 Type: Type-I Location: 37484-38002 bp Gene: COG1203:cas3 Type: Type-I Location: 38050-40371 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 40382-41083 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 41085-41999 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 42001-43851 bp Gene: pfam01881:cas6 Type: other Location: 43857-44651 bp Gene: pfam13280:WYL Type: other Location: 44672-45586 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35557-36048 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISQ01000150.1 Clostridioides difficile FD161 DNA, sequence150, whole genome shotgun sequence

⇒Summary: seq-len = 9049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-292 bp Zoom in on locus 1 x5 CRISPR array Location: 0-292 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-292 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISQ01000036.1 Clostridioides difficile FD161 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 28389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1671-2230 bp Zoom in on locus 1 x9 CRISPR array Location: 1671-2230 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1671-2230 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1671-2230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISQ01000202.1 Clostridioides difficile FD161 DNA, sequence202, whole genome shotgun sequence

⇒Summary: seq-len = 3528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-620 bp Zoom in on locus 1 x10 CRISPR array Location: 0-620 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-620 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISQ01000210.1 Clostridioides difficile FD161 DNA, sequence210, whole genome shotgun sequence

⇒Summary: seq-len = 3251 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3038-3262 bp Zoom in on locus 1 x4 CRISPR array Location: 3038-3262 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3038-3262 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3038-3262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISQ01000018.1 Clostridioides difficile FD161 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 40708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32663-32757 bp Zoom in on locus 1 x2 CRISPR array Location: 32663-32757 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 32663-32757 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32663-32757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISQ01000007.1 Clostridioides difficile FD161 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 64790 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25095-33416 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 25095-26204 bp Gene: unk Type: unknown Location: 26638-26814 bp Gene: pfam01881:cas6 Type: other Location: 26915-27652 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 27657-29132 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 29152-30168 bp Gene: cd09693:cas5 Type: Type-I Location: 30184-30981 bp Gene: cd09641:cas3HD Type: Type-I Location: 31008-33416 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)