CRISPRone

CRISPRone report for GCA_004316725.1_ASM431672v1

♦ Seq 1: BISR01000127.1 Clostridioides difficile FD163 DNA, sequence127, whole genome shotgun sequence

⇒Summary: seq-len = 6181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-478 bp Zoom in on locus 1 x8 CRISPR array Location: 0-478 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-478 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISR01000138.1 Clostridioides difficile FD163 DNA, sequence138, whole genome shotgun sequence

⇒Summary: seq-len = 4695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 723-2396 bp Zoom in on locus 1 x26 CRISPR array Location: 723-2396 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 723-2396 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 723-2396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISR01000006.1 Clostridioides difficile FD163 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 106400 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51856-59721 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51856-54264 bp Gene: cd09693:cas5 Type: Type-I Location: 54291-55088 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55104-56117 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56137-57612 bp Gene: pfam01881:cas6 Type: other Location: 57617-58354 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58612-59721 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISR01000083.1 Clostridioides difficile FD163 DNA, sequence083, whole genome shotgun sequence

⇒Summary: seq-len = 15916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6367-6461 bp Zoom in on locus 1 x2 CRISPR array Location: 6367-6461 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6367-6461 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6367-6461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISR01000029.1 Clostridioides difficile FD163 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 38267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12234-12460 bp Zoom in on locus 1 x4 CRISPR array Location: 12234-12460 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 12234-12460 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12234-12460 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISR01000126.1 Clostridioides difficile FD163 DNA, sequence126, whole genome shotgun sequence

⇒Summary: seq-len = 6252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5444-6001 bp Zoom in on locus 1 x9 CRISPR array Location: 5444-6001 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5444-6001 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5444-6001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISR01000089.1 Clostridioides difficile FD163 DNA, sequence089, whole genome shotgun sequence

⇒Summary: seq-len = 13205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6617-7376 bp Zoom in on locus 1 x12 CRISPR array Location: 6617-7376 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 6617-7376 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6617-7376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISR01000013.1 Clostridioides difficile FD163 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 61608 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40982-41403 bp Zoom in on locus 1 x7 CRISPR array Location: 40982-41403 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 40982-41403 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40982-41403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISR01000099.1 Clostridioides difficile FD163 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 11516 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9172-11015 bp Zoom in on locus 1 x13 x7 CRISPR array Location: 9172-9989 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 9172-9989 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 10592-11015 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 10592-11015 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9172-9989 bp]: array | spacers
           [Locus range 10592-11015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISR01000065.1 Clostridioides difficile FD163 DNA, sequence065, whole genome shotgun sequence

⇒Summary: seq-len = 20595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2822-3047 bp Zoom in on locus 1 x4 CRISPR array Location: 2822-3047 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2822-3047 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2822-3047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)