CRISPRone

CRISPRone report for GCA_004316785.1_ASM431678v1

♦ Seq 1: BISU01000036.1 Clostridioides difficile FD174 DNA, sequence36, whole genome shotgun sequence

⇒Summary: seq-len = 48186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4025-4382 bp Zoom in on locus 1 x6 CRISPR array Location: 4025-4382 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4025-4382 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4025-4382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISU01000019.1 Clostridioides difficile FD174 DNA, sequence19, whole genome shotgun sequence

⇒Summary: seq-len = 84410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80587-81203 bp Zoom in on locus 1 x10 CRISPR array Location: 80587-81203 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80587-81203 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80587-81203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISU01000001.1 Clostridioides difficile FD174 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 197581 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153752-153845 bp Zoom in on locus 1 x2 CRISPR array Location: 153752-153845 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 153752-153845 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 153752-153845 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISU01000021.1 Clostridioides difficile FD174 DNA, sequence21, whole genome shotgun sequence

⇒Summary: seq-len = 78048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1912-2471 bp Zoom in on locus 1 x9 CRISPR array Location: 1912-2471 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1912-2471 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1912-2471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISU01000039.1 Clostridioides difficile FD174 DNA, sequence39, whole genome shotgun sequence

⇒Summary: seq-len = 40766 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27974-28196 bp Zoom in on locus 1 x4 CRISPR array Location: 27974-28196 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 27974-28196 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27974-28196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISU01000031.1 Clostridioides difficile FD174 DNA, sequence31, whole genome shotgun sequence

⇒Summary: seq-len = 58167 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48285-49434 bp Zoom in on locus 1 x18 CRISPR array Location: 48285-49434 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 48285-49434 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48285-49434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISU01000006.1 Clostridioides difficile FD174 DNA, sequence06, whole genome shotgun sequence

⇒Summary: seq-len = 165166 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91628-91789 bp Zoom in on locus 1 x3 CRISPR array Location: 91628-91789 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91628-91789 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91628-91789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISU01000048.1 Clostridioides difficile FD174 DNA, sequence48, whole genome shotgun sequence

⇒Summary: seq-len = 22728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3776-4794 bp Zoom in on locus 1 x16 CRISPR array Location: 3776-4794 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3776-4794 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3776-4794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISU01000009.1 Clostridioides difficile FD174 DNA, sequence09, whole genome shotgun sequence

⇒Summary: seq-len = 131987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112717-113473 bp Zoom in on locus 1 x12 CRISPR array Location: 112717-113473 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 112717-113473 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112717-113473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISU01000005.1 Clostridioides difficile FD174 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 165832 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86425-97495 bp Zoom in on locus 1 x24 CRISPR array Location: 86425-87957 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 86425-87957 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 88141-88407 bp Gene: cd09722:cas1 Type: universal Location: 88410-89390 bp Gene: pfam01930:cas4 Type: Type-I Location: 89393-89911 bp Gene: COG1203:cas3 Type: Type-I Location: 89959-92280 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 92291-92992 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92994-93908 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 93910-95760 bp Gene: pfam01881:cas6 Type: other Location: 95766-96560 bp Gene: pfam13280:WYL Type: other Location: 96581-97495 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 86425-87957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BISU01000010.1 Clostridioides difficile FD174 DNA, sequence10, whole genome shotgun sequence

⇒Summary: seq-len = 129231 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69181-77502 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69181-70290 bp Gene: unk Type: unknown Location: 70724-70900 bp Gene: pfam01881:cas6 Type: other Location: 71001-71738 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71743-73218 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73238-74254 bp Gene: cd09693:cas5 Type: Type-I Location: 74270-75067 bp Gene: cd09641:cas3HD Type: Type-I Location: 75094-77502 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)