CRISPRone

CRISPRone report for GCA_004316805.1_ASM431680v1

♦ Seq 1: BISV01000046.1 Clostridioides difficile FD175 DNA, sequence46, whole genome shotgun sequence

⇒Summary: seq-len = 10330 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3128-6741 bp Zoom in on locus 1 x13 x8 CRISPR array Location: 3128-3950 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3128-3950 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 6254-6741 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 6254-6741 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3128-3950 bp]: array | spacers
           [Locus range 6254-6741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISV01000001.1 Clostridioides difficile FD175 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 533393 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24270-24496 bp 2 Locus 2: 134781-135201 bp 3 Locus 3: 343344-343636 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 24270-24496 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24270-24496 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 134781-135201 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 134781-135201 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 343344-343636 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 343344-343636 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24270-24496 bp]: array | spacers
           [Locus range 134781-135201 bp]: array | spacers
           [Locus range 343344-343636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISV01000002.1 Clostridioides difficile FD175 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 253568 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91871-92033 bp Zoom in on locus 1 x3 CRISPR array Location: 91871-92033 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91871-92033 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91871-92033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISV01000020.1 Clostridioides difficile FD175 DNA, sequence20, whole genome shotgun sequence

⇒Summary: seq-len = 66936 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63353-66947 bp Zoom in on locus 1 x23 Gene: cd09725:cas2 Type: universal Location: 63353-63643 bp Gene: cd09722:cas1 Type: universal Location: 63854-64861 bp Gene: pfam01930:cas4 Type: Type-I Location: 64887-65381 bp CRISPR array Location: 65466-66947 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 65466-66947 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 65466-66947 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISV01000021.1 Clostridioides difficile FD175 DNA, sequence21, whole genome shotgun sequence

⇒Summary: seq-len = 66717 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISV01000005.1 Clostridioides difficile FD175 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 212022 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28325-36190 bp 2 Locus 2: 109438-109995 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 28325-30733 bp Gene: cd09693:cas5 Type: Type-I Location: 30760-31557 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31573-32586 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32606-34081 bp Gene: pfam01881:cas6 Type: other Location: 34086-34823 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35081-36190 bp CRISPR array Location: 109438-109995 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 109438-109995 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109438-109995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISV01000006.1 Clostridioides difficile FD175 DNA, sequence06, whole genome shotgun sequence

⇒Summary: seq-len = 198013 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189451-198009 bp Zoom in on locus 1 x25 Gene: cd09652:cas6 Type: other Location: 189451-190146 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 190158-191897 bp Gene: pfam05107:cas7b Type: Type-I Location: 191890-192879 bp Gene: cd09693:cas5 Type: Type-I Location: 192881-193621 bp Gene: cd09641:cas3HD Type: Type-I Location: 193645-196203 bp CRISPR array Location: 196393-198009 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 196393-198009 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196393-198009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)