CRISPRone

CRISPRone report for GCA_004316825.1_ASM431682v1

♦ Seq 1: BISW01000030.1 Clostridioides difficile FD176 DNA, sequence30, whole genome shotgun sequence

⇒Summary: seq-len = 55855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13430-13719 bp Zoom in on locus 1 x5 CRISPR array Location: 13430-13719 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13430-13719 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13430-13719 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISW01000007.1 Clostridioides difficile FD176 DNA, sequence07, whole genome shotgun sequence

⇒Summary: seq-len = 125424 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89358-89842 bp Zoom in on locus 1 x8 CRISPR array Location: 89358-89842 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 89358-89842 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89358-89842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISW01000001.1 Clostridioides difficile FD176 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 238415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 233842-234402 bp Zoom in on locus 1 x9 CRISPR array Location: 233842-234402 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 233842-234402 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 233842-234402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISW01000040.1 Clostridioides difficile FD176 DNA, sequence40, whole genome shotgun sequence

⇒Summary: seq-len = 35672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17878-18432 bp Zoom in on locus 1 x9 CRISPR array Location: 17878-18432 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17878-18432 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17878-18432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISW01000045.1 Clostridioides difficile FD176 DNA, sequence45, whole genome shotgun sequence

⇒Summary: seq-len = 32142 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-3230 bp 2 Locus 2: 27141-27433 bp Zoom in on locus 1 x4 x6 Zoom in on locus 2 x5 CRISPR array Location: 0-226 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-226 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2870-3230 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 2870-3230 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 27141-27433 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 27141-27433 bp Num of repeats: 5 Spacers: s9-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-226 bp]: array | spacers
           [Locus range 2870-3230 bp]: array | spacers
           [Locus range 27141-27433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISW01000025.1 Clostridioides difficile FD176 DNA, sequence25, whole genome shotgun sequence

⇒Summary: seq-len = 68622 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6529-7945 bp Zoom in on locus 1 x22 CRISPR array Location: 6529-7945 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 6529-7945 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6529-7945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISW01000008.1 Clostridioides difficile FD176 DNA, sequence08, whole genome shotgun sequence

⇒Summary: seq-len = 120981 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114872-115099 bp Zoom in on locus 1 x4 CRISPR array Location: 114872-115099 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 114872-115099 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114872-115099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BISW01000018.1 Clostridioides difficile FD176 DNA, sequence18, whole genome shotgun sequence

⇒Summary: seq-len = 84277 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59475-59897 bp Zoom in on locus 1 x7 CRISPR array Location: 59475-59897 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 59475-59897 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59475-59897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BISW01000002.1 Clostridioides difficile FD176 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 180161 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107124-118338 bp Zoom in on locus 1 x26 CRISPR array Location: 107124-108800 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 107124-108800 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 108984-109250 bp Gene: cd09722:cas1 Type: universal Location: 109253-110233 bp Gene: pfam01930:cas4 Type: Type-I Location: 110236-110754 bp Gene: cd09641:cas3HD Type: Type-I Location: 110802-113123 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 113134-113835 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113837-114751 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 114753-116039 bp Gene: unk Type: unknown Location: 116097-116603 bp Gene: pfam01881:cas6 Type: other Location: 116609-117403 bp Gene: pfam13280:WYL Type: other Location: 117424-118338 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 107124-108800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BISW01000061.1 Clostridioides difficile FD176 DNA, sequence61, whole genome shotgun sequence

⇒Summary: seq-len = 17695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17541-17635 bp Zoom in on locus 1 x2 CRISPR array Location: 17541-17635 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17541-17635 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17541-17635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BISW01000012.1 Clostridioides difficile FD176 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 111770 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70947-80679 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 70947-72056 bp Gene: cas14:cas14 Type: Type-V Location: 72209-73381 bp Gene: unk Type: unknown Location: 73409-73867 bp Gene: pfam01881:cas6 Type: other Location: 74181-74918 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 74923-76398 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76418-77431 bp Gene: cd09693:cas5 Type: Type-I Location: 77447-78244 bp Gene: cd09641:cas3HD Type: Type-I Location: 78271-80679 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)