CRISPRone

CRISPRone report for GCA_004316885.1_ASM431688v1

♦ Seq 1: BISZ01000020.1 Clostridioides difficile FD179 DNA, sequence20, whole genome shotgun sequence

⇒Summary: seq-len = 84305 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55864-56225 bp Zoom in on locus 1 x6 CRISPR array Location: 55864-56225 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 55864-56225 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55864-56225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BISZ01000010.1 Clostridioides difficile FD179 DNA, sequence10, whole genome shotgun sequence

⇒Summary: seq-len = 121240 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92091-92251 bp Zoom in on locus 1 x3 CRISPR array Location: 92091-92251 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 92091-92251 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92091-92251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BISZ01000062.1 Clostridioides difficile FD179 DNA, sequence62, whole genome shotgun sequence

⇒Summary: seq-len = 11739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8095-8583 bp Zoom in on locus 1 x8 CRISPR array Location: 8095-8583 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8095-8583 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8095-8583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BISZ01000058.1 Clostridioides difficile FD179 DNA, sequence58, whole genome shotgun sequence

⇒Summary: seq-len = 16747 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11576-11670 bp Zoom in on locus 1 x2 CRISPR array Location: 11576-11670 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11576-11670 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11576-11670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BISZ01000012.1 Clostridioides difficile FD179 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 107507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8723-9079 bp Zoom in on locus 1 x6 CRISPR array Location: 8723-9079 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8723-9079 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8723-9079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BISZ01000011.1 Clostridioides difficile FD179 DNA, sequence11, whole genome shotgun sequence

⇒Summary: seq-len = 113296 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51792-61515 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51792-54200 bp Gene: cd09693:cas5 Type: Type-I Location: 54227-55024 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55040-56053 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56073-57539 bp Gene: pfam01881:cas6 Type: other Location: 57544-58281 bp Gene: unk Type: unknown Location: 58595-59053 bp Gene: cas14:cas14 Type: Type-V Location: 59081-60253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60406-61515 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BISZ01000025.1 Clostridioides difficile FD179 DNA, sequence25, whole genome shotgun sequence

⇒Summary: seq-len = 63609 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17875-18495 bp Zoom in on locus 1 x10 CRISPR array Location: 17875-18495 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17875-18495 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17875-18495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)