CRISPRone

CRISPRone report for GCA_004316925.1_ASM431692v1

♦ Seq 1: BITB01000013.1 Clostridioides difficile FD181 DNA, sequence13, whole genome shotgun sequence

⇒Summary: seq-len = 110314 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92210-92370 bp Zoom in on locus 1 x3 CRISPR array Location: 92210-92370 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 92210-92370 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92210-92370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITB01000007.1 Clostridioides difficile FD181 DNA, sequence07, whole genome shotgun sequence

⇒Summary: seq-len = 126231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97888-98245 bp Zoom in on locus 1 x6 CRISPR array Location: 97888-98245 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97888-98245 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97888-98245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITB01000027.1 Clostridioides difficile FD181 DNA, sequence27, whole genome shotgun sequence

⇒Summary: seq-len = 63481 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45113-45732 bp Zoom in on locus 1 x10 CRISPR array Location: 45113-45732 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45113-45732 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45113-45732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITB01000030.1 Clostridioides difficile FD181 DNA, sequence30, whole genome shotgun sequence

⇒Summary: seq-len = 59022 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11576-11670 bp Zoom in on locus 1 x2 CRISPR array Location: 11576-11670 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11576-11670 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11576-11670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITB01000024.1 Clostridioides difficile FD181 DNA, sequence24, whole genome shotgun sequence

⇒Summary: seq-len = 73743 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51755-61478 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51755-54163 bp Gene: cd09693:cas5 Type: Type-I Location: 54190-54987 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55003-56016 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56036-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: unk Type: unknown Location: 58558-59016 bp Gene: cas14:cas14 Type: Type-V Location: 59044-60216 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60369-61478 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITB01000029.1 Clostridioides difficile FD181 DNA, sequence29, whole genome shotgun sequence

⇒Summary: seq-len = 60367 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3905-4265 bp Zoom in on locus 1 x6 CRISPR array Location: 3905-4265 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3905-4265 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3905-4265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)