CRISPRone

CRISPRone report for GCA_004316945.1_ASM431694v1

♦ Seq 1: BITC01000006.1 Clostridioides difficile FD182 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 83184 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29313-32776 bp Zoom in on locus 1 x5 x9 x6 CRISPR array Location: 29313-29602 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 29313-29602 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31256-31812 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 31256-31812 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 32415-32776 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 32415-32776 bp Num of repeats: 6 Spacers: s13-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29313-29602 bp]: array | spacers
           [Locus range 31256-31812 bp]: array | spacers
           [Locus range 32415-32776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITC01000071.1 Clostridioides difficile FD182 DNA, sequence071, whole genome shotgun sequence

⇒Summary: seq-len = 19603 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-491 bp Zoom in on locus 1 x8 CRISPR array Location: 0-491 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-491 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITC01000004.1 Clostridioides difficile FD182 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 88202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28523-28748 bp Zoom in on locus 1 x4 CRISPR array Location: 28523-28748 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 28523-28748 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28523-28748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITC01000101.1 Clostridioides difficile FD182 DNA, sequence101, whole genome shotgun sequence

⇒Summary: seq-len = 9773 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8734-9289 bp Zoom in on locus 1 x9 CRISPR array Location: 8734-9289 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8734-9289 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8734-9289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITC01000036.1 Clostridioides difficile FD182 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 43823 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33773-43495 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33773-36181 bp Gene: cd09693:cas5 Type: Type-I Location: 36208-37005 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37021-38034 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38053-39519 bp Gene: pfam01881:cas6 Type: other Location: 39524-40261 bp Gene: unk Type: unknown Location: 40575-41033 bp Gene: cas14:cas14 Type: Type-V Location: 41061-42233 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 42386-43495 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITC01000059.1 Clostridioides difficile FD182 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 24069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23389-24076 bp Zoom in on locus 1 x11 CRISPR array Location: 23389-24076 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 23389-24076 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23389-24076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)