CRISPRone

CRISPRone report for GCA_004317065.1_ASM431706v1

♦ Seq 1: BITI01000013.1 Clostridioides difficile FD188 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 86477 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73347-73574 bp Zoom in on locus 1 x4 CRISPR array Location: 73347-73574 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 73347-73574 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73347-73574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITI01000067.1 Clostridioides difficile FD188 DNA, sequence067, whole genome shotgun sequence

⇒Summary: seq-len = 17722 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16057-17733 bp Zoom in on locus 1 x26 CRISPR array Location: 16057-17733 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 16057-17733 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16057-17733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITI01000005.1 Clostridioides difficile FD188 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 132556 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51727-61459 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51727-54135 bp Gene: cd09693:cas5 Type: Type-I Location: 54162-54959 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54975-55988 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56008-57483 bp Gene: pfam01881:cas6 Type: other Location: 57488-58225 bp Gene: unk Type: unknown Location: 58539-58997 bp Gene: cas14:cas14 Type: Type-V Location: 59025-60197 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60350-61459 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITI01000008.1 Clostridioides difficile FD188 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 101428 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 213-9567 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 213-479 bp Gene: cd09722:cas1 Type: universal Location: 482-1462 bp Gene: pfam01930:cas4 Type: Type-I Location: 1465-1983 bp Gene: cd09641:cas3HD Type: Type-I Location: 2031-4352 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4363-5064 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5066-5980 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5982-7268 bp Gene: unk Type: unknown Location: 7326-7832 bp Gene: pfam01881:cas6 Type: other Location: 7838-8632 bp Gene: pfam13280:WYL Type: other Location: 8653-9567 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITI01000002.1 Clostridioides difficile FD188 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 159632 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4035-4594 bp Zoom in on locus 1 x9 CRISPR array Location: 4035-4594 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4035-4594 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4035-4594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITI01000028.1 Clostridioides difficile FD188 DNA, sequence028, whole genome shotgun sequence

⇒Summary: seq-len = 57078 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38655-39208 bp Zoom in on locus 1 x9 CRISPR array Location: 38655-39208 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38655-39208 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38655-39208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITI01000006.1 Clostridioides difficile FD188 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 116352 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17575-23377 bp 2 Locus 2: 47288-47580 bp Zoom in on locus 1 x2 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 17575-17669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17575-17669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20081-20373 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 20081-20373 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 23017-23377 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 23017-23377 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 47288-47580 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 47288-47580 bp Num of repeats: 5 Spacers: s11-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17575-17669 bp]: array | spacers
           [Locus range 20081-20373 bp]: array | spacers
           [Locus range 23017-23377 bp]: array | spacers
           [Locus range 47288-47580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITI01000003.1 Clostridioides difficile FD188 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 155543 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84981-85403 bp Zoom in on locus 1 x7 CRISPR array Location: 84981-85403 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 84981-85403 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84981-85403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BITI01000033.1 Clostridioides difficile FD188 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 49559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1075 bp Zoom in on locus 1 x17 CRISPR array Location: 0-1075 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-1075 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BITI01000080.1 Clostridioides difficile FD188 DNA, sequence080, whole genome shotgun sequence

⇒Summary: seq-len = 8338 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2949-3433 bp Zoom in on locus 1 x8 CRISPR array Location: 2949-3433 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2949-3433 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2949-3433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BITI01000030.1 Clostridioides difficile FD188 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 55525 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41808-42098 bp Zoom in on locus 1 x5 CRISPR array Location: 41808-42098 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 41808-42098 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41808-42098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)