CRISPRone

CRISPRone report for GCA_004317145.1_ASM431714v1

♦ Seq 1: BITM01000221.1 Clostridioides difficile FD192 DNA, sequence221, whole genome shotgun sequence

⇒Summary: seq-len = 3043 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81-3042 bp Zoom in on locus 1 x21 Gene: cd09722:cas1 Type: universal Location: 81-1088 bp Gene: pfam01930:cas4 Type: Type-I Location: 1114-1608 bp CRISPR array Location: 1693-3042 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1693-3042 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1693-3042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITM01000145.1 Clostridioides difficile FD192 DNA, sequence145, whole genome shotgun sequence

⇒Summary: seq-len = 9012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8082-8833 bp Zoom in on locus 1 x12 CRISPR array Location: 8082-8833 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8082-8833 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8082-8833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITM01000100.1 Clostridioides difficile FD192 DNA, sequence100, whole genome shotgun sequence

⇒Summary: seq-len = 13233 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1433-1595 bp Zoom in on locus 1 x3 CRISPR array Location: 1433-1595 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1433-1595 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1433-1595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITM01000172.1 Clostridioides difficile FD192 DNA, sequence172, whole genome shotgun sequence

⇒Summary: seq-len = 5707 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5348-5709 bp Zoom in on locus 1 x6 CRISPR array Location: 5348-5709 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5348-5709 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5348-5709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITM01000106.1 Clostridioides difficile FD192 DNA, sequence106, whole genome shotgun sequence

⇒Summary: seq-len = 12736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7369-7661 bp Zoom in on locus 1 x5 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7369-7661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITM01000004.1 Clostridioides difficile FD192 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 77449 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 513-8378 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 513-2921 bp Gene: cd09693:cas5 Type: Type-I Location: 2948-3745 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3761-4774 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4794-6269 bp Gene: pfam01881:cas6 Type: other Location: 6274-7011 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 7269-8378 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITM01000169.1 Clostridioides difficile FD192 DNA, sequence169, whole genome shotgun sequence

⇒Summary: seq-len = 6054 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106-663 bp Zoom in on locus 1 x9 CRISPR array Location: 106-663 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106-663 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106-663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITM01000154.1 Clostridioides difficile FD192 DNA, sequence154, whole genome shotgun sequence

⇒Summary: seq-len = 8058 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 173-8071 bp Zoom in on locus 1 x15 Gene: cd09652:cas6 Type: other Location: 173-868 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 880-2619 bp Gene: pfam05107:cas7b Type: Type-I Location: 2612-3601 bp Gene: cd09693:cas5 Type: Type-I Location: 3603-4343 bp Gene: cd09641:cas3HD Type: Type-I Location: 4367-6925 bp CRISPR array Location: 7115-8071 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 7115-8071 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7115-8071 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BITM01000196.1 Clostridioides difficile FD192 DNA, sequence196, whole genome shotgun sequence

⇒Summary: seq-len = 4419 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1200-1426 bp Zoom in on locus 1 x4 CRISPR array Location: 1200-1426 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1200-1426 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1200-1426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BITM01000075.1 Clostridioides difficile FD192 DNA, sequence075, whole genome shotgun sequence

⇒Summary: seq-len = 16328 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6019-6439 bp Zoom in on locus 1 x7 CRISPR array Location: 6019-6439 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6019-6439 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6019-6439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)