CRISPRone

CRISPRone report for GCA_004317165.1_ASM431716v1

♦ Seq 1: BITN01000258.1 Clostridioides difficile FD193 DNA, sequence258, whole genome shotgun sequence

⇒Summary: seq-len = 3362 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1088-1448 bp Zoom in on locus 1 x6 CRISPR array Location: 1088-1448 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1088-1448 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1088-1448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITN01000009.1 Clostridioides difficile FD193 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 45561 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20058-27923 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 20058-21167 bp Gene: pfam01881:cas6 Type: other Location: 21425-22162 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22167-23642 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23662-24675 bp Gene: cd09693:cas5 Type: Type-I Location: 24691-25488 bp Gene: cd09641:cas3HD Type: Type-I Location: 25515-27923 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITN01000306.1 Clostridioides difficile FD193 DNA, sequence306, whole genome shotgun sequence

⇒Summary: seq-len = 1470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1283-1381 bp Zoom in on locus 1 x2 CRISPR array Location: 1283-1381 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1283-1381 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1283-1381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITN01000083.1 Clostridioides difficile FD193 DNA, sequence083, whole genome shotgun sequence

⇒Summary: seq-len = 15584 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5036-5328 bp Zoom in on locus 1 x5 CRISPR array Location: 5036-5328 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5036-5328 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5036-5328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITN01000265.1 Clostridioides difficile FD193 DNA, sequence265, whole genome shotgun sequence

⇒Summary: seq-len = 3032 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196-3029 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 196-936 bp Gene: pfam05107:cas7b Type: Type-I Location: 938-1927 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1920-3029 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITN01000233.1 Clostridioides difficile FD193 DNA, sequence233, whole genome shotgun sequence

⇒Summary: seq-len = 4350 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3617 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1-189 bp Gene: unk Type: unknown Location: 806-940 bp Gene: unk Type: unknown Location: 1151-1903 bp Gene: cd09718:cas1 Type: universal Location: 1962-3617 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITN01000325.1 Clostridioides difficile FD193 DNA, sequence325, whole genome shotgun sequence

⇒Summary: seq-len = 1242 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72-1240 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 72-767 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 779-1240 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITN01000227.1 Clostridioides difficile FD193 DNA, sequence227, whole genome shotgun sequence

⇒Summary: seq-len = 4431 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4429 bp Zoom in on locus 1 x44 CRISPR array Location: 1-2869 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 1-2869 bp Num of repeats: 44 Spacers: s1-s43 Gene: pfam01930:cas4 Type: Type-I Location: 2953-3447 bp Gene: cd09722:cas1 Type: universal Location: 3473-4429 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-2869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BITN01000102.1 Clostridioides difficile FD193 DNA, sequence102, whole genome shotgun sequence

⇒Summary: seq-len = 12824 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11178-11598 bp Zoom in on locus 1 x7 CRISPR array Location: 11178-11598 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11178-11598 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11178-11598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BITN01000142.1 Clostridioides difficile FD193 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 8817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4772-5522 bp Zoom in on locus 1 x12 CRISPR array Location: 4772-5522 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4772-5522 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4772-5522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BITN01000223.1 Clostridioides difficile FD193 DNA, sequence223, whole genome shotgun sequence

⇒Summary: seq-len = 4648 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1498-1724 bp Zoom in on locus 1 x4 CRISPR array Location: 1498-1724 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1498-1724 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1498-1724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BITN01000198.1 Clostridioides difficile FD193 DNA, sequence198, whole genome shotgun sequence

⇒Summary: seq-len = 5770 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1805-1966 bp Zoom in on locus 1 x3 CRISPR array Location: 1805-1966 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1805-1966 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1805-1966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)