CRISPRone

CRISPRone report for GCA_004317185.1_ASM431718v1

♦ Seq 1: BITO01000046.1 Clostridioides difficile FD194 DNA, sequence046, whole genome shotgun sequence

⇒Summary: seq-len = 28142 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 625-10348 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 625-1734 bp Gene: cas14:cas14 Type: Type-V Location: 1887-3059 bp Gene: unk Type: unknown Location: 3087-3545 bp Gene: pfam01881:cas6 Type: other Location: 3859-4596 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4601-6067 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 6087-7100 bp Gene: cd09693:cas5 Type: Type-I Location: 7116-7913 bp Gene: cd09641:cas3HD Type: Type-I Location: 7940-10348 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITO01000087.1 Clostridioides difficile FD194 DNA, sequence087, whole genome shotgun sequence

⇒Summary: seq-len = 16750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2677-3033 bp Zoom in on locus 1 x6 CRISPR array Location: 2677-3033 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2677-3033 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2677-3033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITO01000147.1 Clostridioides difficile FD194 DNA, sequence147, whole genome shotgun sequence

⇒Summary: seq-len = 7823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6284-6644 bp Zoom in on locus 1 x6 CRISPR array Location: 6284-6644 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6284-6644 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6284-6644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITO01000070.1 Clostridioides difficile FD194 DNA, sequence070, whole genome shotgun sequence

⇒Summary: seq-len = 21113 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3027-3647 bp Zoom in on locus 1 x10 CRISPR array Location: 3027-3647 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3027-3647 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3027-3647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITO01000004.1 Clostridioides difficile FD194 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 65217 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18286-22162 bp Zoom in on locus 1 x2 x14 x6 x2 CRISPR array Location: 18286-18380 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 18286-18380 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20162-21048 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 20162-21048 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 21651-22008 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 21651-22008 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 22070-22162 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 22070-22162 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18286-18380 bp]: array | spacers
           [Locus range 20162-21048 bp]: array | spacers
           [Locus range 21651-22008 bp]: array | spacers
           [Locus range 22070-22162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITO01000038.1 Clostridioides difficile FD194 DNA, sequence038, whole genome shotgun sequence

⇒Summary: seq-len = 32385 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14513-14673 bp Zoom in on locus 1 x3 CRISPR array Location: 14513-14673 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14513-14673 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14513-14673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)