CRISPRone

CRISPRone report for GCA_004317225.1_ASM431722v1

♦ Seq 1: BITQ01000002.1 Clostridioides difficile FD196 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 63140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54241-54598 bp Zoom in on locus 1 x6 CRISPR array Location: 54241-54598 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 54241-54598 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54241-54598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITQ01000201.1 Clostridioides difficile FD196 DNA, sequence201, whole genome shotgun sequence

⇒Summary: seq-len = 5571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-360 bp Zoom in on locus 1 x6 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITQ01000133.1 Clostridioides difficile FD196 DNA, sequence133, whole genome shotgun sequence

⇒Summary: seq-len = 10586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5411-5571 bp Zoom in on locus 1 x3 CRISPR array Location: 5411-5571 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5411-5571 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5411-5571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITQ01000001.1 Clostridioides difficile FD196 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 70704 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24749-34472 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 24749-25858 bp Gene: cas14:cas14 Type: Type-V Location: 26011-27183 bp Gene: unk Type: unknown Location: 27211-27669 bp Gene: pfam01881:cas6 Type: other Location: 27983-28720 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 28725-30191 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 30211-31224 bp Gene: cd09693:cas5 Type: Type-I Location: 31240-32037 bp Gene: cd09641:cas3HD Type: Type-I Location: 32064-34472 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITQ01000235.1 Clostridioides difficile FD196 DNA, sequence235, whole genome shotgun sequence

⇒Summary: seq-len = 3471 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3255-3483 bp Zoom in on locus 1 x4 CRISPR array Location: 3255-3483 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3255-3483 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3255-3483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)