CRISPRone

CRISPRone report for GCA_004317265.1_ASM431726v1

♦ Seq 1: BITS01000019.1 Clostridioides difficile FD198 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 33475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30452-30680 bp Zoom in on locus 1 x4 CRISPR array Location: 30452-30680 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 30452-30680 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30452-30680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITS01000069.1 Clostridioides difficile FD198 DNA, sequence069, whole genome shotgun sequence

⇒Summary: seq-len = 19236 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18954-19181 bp Zoom in on locus 1 x4 CRISPR array Location: 18954-19181 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18954-19181 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18954-19181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITS01000193.1 Clostridioides difficile FD198 DNA, sequence193, whole genome shotgun sequence

⇒Summary: seq-len = 6447 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1075 bp Zoom in on locus 1 x17 CRISPR array Location: 0-1075 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-1075 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITS01000231.1 Clostridioides difficile FD198 DNA, sequence231, whole genome shotgun sequence

⇒Summary: seq-len = 5019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4204-5022 bp Zoom in on locus 1 x13 CRISPR array Location: 4204-5022 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4204-5022 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4204-5022 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITS01000129.1 Clostridioides difficile FD198 DNA, sequence129, whole genome shotgun sequence

⇒Summary: seq-len = 10414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5069-5491 bp Zoom in on locus 1 x7 CRISPR array Location: 5069-5491 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5069-5491 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5069-5491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITS01000067.1 Clostridioides difficile FD198 DNA, sequence067, whole genome shotgun sequence

⇒Summary: seq-len = 19559 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16406-19506 bp Zoom in on locus 1 x6 x2 CRISPR array Location: 16406-16767 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 16406-16767 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 19410-19506 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 19410-19506 bp Num of repeats: 2 Spacers: s6-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16406-16767 bp]: array | spacers
           [Locus range 19410-19506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITS01000023.1 Clostridioides difficile FD198 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 30837 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13798-14087 bp Zoom in on locus 1 x5 CRISPR array Location: 13798-14087 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13798-14087 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13798-14087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITS01000125.1 Clostridioides difficile FD198 DNA, sequence125, whole genome shotgun sequence

⇒Summary: seq-len = 10663 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5-10430 bp Zoom in on locus 1 x14 CRISPR array Location: 5-892 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5-892 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 1076-1342 bp Gene: cd09722:cas1 Type: universal Location: 1345-2325 bp Gene: pfam01930:cas4 Type: Type-I Location: 2328-2846 bp Gene: cd09641:cas3HD Type: Type-I Location: 2894-5215 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 5226-5927 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5929-6843 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 6845-8131 bp Gene: unk Type: unknown Location: 8189-8695 bp Gene: pfam01881:cas6 Type: other Location: 8701-9495 bp Gene: pfam13280:WYL Type: other Location: 9516-10430 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5-892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BITS01000192.1 Clostridioides difficile FD198 DNA, sequence192, whole genome shotgun sequence

⇒Summary: seq-len = 6490 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6162 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-401 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 406-1881 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1901-2914 bp Gene: cd09693:cas5 Type: Type-I Location: 2930-3727 bp Gene: cd09641:cas3HD Type: Type-I Location: 3754-6162 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BITS01000082.1 Clostridioides difficile FD198 DNA, sequence082, whole genome shotgun sequence

⇒Summary: seq-len = 16681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14162-14256 bp Zoom in on locus 1 x2 CRISPR array Location: 14162-14256 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14162-14256 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14162-14256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BITS01000070.1 Clostridioides difficile FD198 DNA, sequence070, whole genome shotgun sequence

⇒Summary: seq-len = 18569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-746 bp Zoom in on locus 1 x9 CRISPR array Location: 192-746 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 192-746 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192-746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)