CRISPRone

CRISPRone report for GCA_004317385.1_ASM431738v1

♦ Seq 1: BITY01000012.1 Clostridioides difficile FD204 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 73778 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44965-45125 bp Zoom in on locus 1 x3 CRISPR array Location: 44965-45125 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 44965-45125 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44965-45125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITY01000005.1 Clostridioides difficile FD204 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 86515 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28631-31685 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 28631-28791 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28631-28791 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 31459-31685 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 31459-31685 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28631-28791 bp]: array | spacers
           [Locus range 31459-31685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITY01000173.1 Clostridioides difficile FD204 DNA, sequence173, whole genome shotgun sequence

⇒Summary: seq-len = 3013 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2730-3022 bp Zoom in on locus 1 x5 CRISPR array Location: 2730-3022 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2730-3022 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2730-3022 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITY01000113.1 Clostridioides difficile FD204 DNA, sequence113, whole genome shotgun sequence

⇒Summary: seq-len = 9792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5779-6398 bp Zoom in on locus 1 x10 CRISPR array Location: 5779-6398 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5779-6398 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5779-6398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITY01000091.1 Clostridioides difficile FD204 DNA, sequence091, whole genome shotgun sequence

⇒Summary: seq-len = 14612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5476-5702 bp Zoom in on locus 1 x4 CRISPR array Location: 5476-5702 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5476-5702 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5476-5702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITY01000148.1 Clostridioides difficile FD204 DNA, sequence148, whole genome shotgun sequence

⇒Summary: seq-len = 6032 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5681-6034 bp Zoom in on locus 1 x6 CRISPR array Location: 5681-6034 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5681-6034 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5681-6034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITY01000130.1 Clostridioides difficile FD204 DNA, sequence130, whole genome shotgun sequence

⇒Summary: seq-len = 7904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7341-7435 bp Zoom in on locus 1 x2 CRISPR array Location: 7341-7435 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7341-7435 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7341-7435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITY01000013.1 Clostridioides difficile FD204 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 67676 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51815-61538 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51815-52924 bp Gene: cas14:cas14 Type: Type-V Location: 53077-54249 bp Gene: unk Type: unknown Location: 54277-54735 bp Gene: pfam01881:cas6 Type: other Location: 55049-55786 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 55791-57257 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 57277-58290 bp Gene: cd09693:cas5 Type: Type-I Location: 58306-59103 bp Gene: cd09641:cas3HD Type: Type-I Location: 59130-61538 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)