CRISPRone

CRISPRone report for GCA_004317405.1_ASM431740v1

♦ Seq 1: BITZ01000460.1 Clostridioides difficile FD205 DNA, sequence460, whole genome shotgun sequence

⇒Summary: seq-len = 1771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1278 bp Zoom in on locus 1 x20 CRISPR array Location: 0-1278 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 0-1278 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITZ01000536.1 Clostridioides difficile FD205 DNA, sequence536, whole genome shotgun sequence

⇒Summary: seq-len = 1081 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1097 bp Zoom in on locus 1 x3 Gene: cd09634:cas1 Type: universal Location: 3-482 bp Gene: cd09725:cas2 Type: universal Location: 485-751 bp CRISPR array Location: 935-1097 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 935-1097 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 935-1097 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITZ01000128.1 Clostridioides difficile FD205 DNA, sequence128, whole genome shotgun sequence

⇒Summary: seq-len = 9938 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8621-8914 bp Zoom in on locus 1 x5 CRISPR array Location: 8621-8914 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8621-8914 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8621-8914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITZ01000291.1 Clostridioides difficile FD205 DNA, sequence291, whole genome shotgun sequence

⇒Summary: seq-len = 4136 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1839-2323 bp Zoom in on locus 1 x8 CRISPR array Location: 1839-2323 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1839-2323 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1839-2323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITZ01000257.1 Clostridioides difficile FD205 DNA, sequence257, whole genome shotgun sequence

⇒Summary: seq-len = 4927 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4910 bp Zoom in on locus 1 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-393 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 395-1309 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1311-2012 bp Gene: cd09641:cas3HD Type: Type-I Location: 2023-4344 bp Gene: pfam01930:cas4 Type: Type-I Location: 4359-4910 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITZ01000121.1 Clostridioides difficile FD205 DNA, sequence121, whole genome shotgun sequence

⇒Summary: seq-len = 10397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7513-7936 bp Zoom in on locus 1 x7 CRISPR array Location: 7513-7936 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7513-7936 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7513-7936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BITZ01000010.1 Clostridioides difficile FD205 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 33871 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13809-14098 bp Zoom in on locus 1 x5 CRISPR array Location: 13809-14098 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13809-14098 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13809-14098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BITZ01000547.1 Clostridioides difficile FD205 DNA, sequence547, whole genome shotgun sequence

⇒Summary: seq-len = 1025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 217-1039 bp Zoom in on locus 1 x13 CRISPR array Location: 217-1039 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 217-1039 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 217-1039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BITZ01000382.1 Clostridioides difficile FD205 DNA, sequence382, whole genome shotgun sequence

⇒Summary: seq-len = 2580 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2426-2521 bp Zoom in on locus 1 x2 CRISPR array Location: 2426-2521 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2426-2521 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2426-2521 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BITZ01000178.1 Clostridioides difficile FD205 DNA, sequence178, whole genome shotgun sequence

⇒Summary: seq-len = 7571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5689-5917 bp Zoom in on locus 1 x4 CRISPR array Location: 5689-5917 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5689-5917 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5689-5917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BITZ01000040.1 Clostridioides difficile FD205 DNA, sequence040, whole genome shotgun sequence

⇒Summary: seq-len = 19163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16228-16589 bp Zoom in on locus 1 x6 CRISPR array Location: 16228-16589 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 16228-16589 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16228-16589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BITZ01000366.1 Clostridioides difficile FD205 DNA, sequence366, whole genome shotgun sequence

⇒Summary: seq-len = 2823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-552 bp Zoom in on locus 1 x6 CRISPR array Location: 192-552 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 192-552 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192-552 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BITZ01000368.1 Clostridioides difficile FD205 DNA, sequence368, whole genome shotgun sequence

⇒Summary: seq-len = 2810 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2280 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 2-427 bp Gene: cd09693:cas5 Type: Type-I Location: 454-1251 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1267-2280 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: BITZ01000131.1 Clostridioides difficile FD205 DNA, sequence131, whole genome shotgun sequence

⇒Summary: seq-len = 9725 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3440 bp Zoom in on locus 1 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2-1141 bp Gene: unk Type: unknown Location: 1199-1705 bp Gene: pfam01881:cas6 Type: other Location: 1711-2505 bp Gene: pfam13280:WYL Type: other Location: 2526-3440 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)