CRISPRone

CRISPRone report for GCA_004317445.1_ASM431744v1

♦ Seq 1: BIUB01000291.1 Clostridioides difficile FD207 DNA, sequence291, whole genome shotgun sequence

⇒Summary: seq-len = 3378 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1009 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1009 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1009 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUB01000142.1 Clostridioides difficile FD207 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 10358 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3321 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 3-1022 bp Gene: unk Type: unknown Location: 1080-1586 bp Gene: pfam01881:cas6 Type: other Location: 1592-2386 bp Gene: pfam13280:WYL Type: other Location: 2407-3321 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUB01000021.1 Clostridioides difficile FD207 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 29895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29552-29907 bp Zoom in on locus 1 x6 CRISPR array Location: 29552-29907 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 29552-29907 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29552-29907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUB01000022.1 Clostridioides difficile FD207 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 29262 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2317-5613 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 2317-2609 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2317-2609 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5253-5613 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 5253-5613 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2317-2609 bp]: array | spacers
           [Locus range 5253-5613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUB01000145.1 Clostridioides difficile FD207 DNA, sequence145, whole genome shotgun sequence

⇒Summary: seq-len = 10071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5068-5490 bp Zoom in on locus 1 x7 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5068-5490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUB01000157.1 Clostridioides difficile FD207 DNA, sequence157, whole genome shotgun sequence

⇒Summary: seq-len = 9505 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7839-8067 bp Zoom in on locus 1 x4 CRISPR array Location: 7839-8067 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 7839-8067 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7839-8067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUB01000029.1 Clostridioides difficile FD207 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 26439 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26096-26189 bp Zoom in on locus 1 x2 CRISPR array Location: 26096-26189 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 26096-26189 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26096-26189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUB01000014.1 Clostridioides difficile FD207 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 34137 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29410-29970 bp Zoom in on locus 1 x9 CRISPR array Location: 29410-29970 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 29410-29970 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29410-29970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUB01000096.1 Clostridioides difficile FD207 DNA, sequence096, whole genome shotgun sequence

⇒Summary: seq-len = 14257 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62-157 bp Zoom in on locus 1 x2 CRISPR array Location: 62-157 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 62-157 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62-157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUB01000053.1 Clostridioides difficile FD207 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 21099 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13252-21098 bp Zoom in on locus 1 x24 CRISPR array Location: 13252-14795 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 13252-14795 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 14979-15245 bp Gene: cd09722:cas1 Type: universal Location: 15248-16228 bp Gene: pfam01930:cas4 Type: Type-I Location: 16231-16749 bp Gene: cd09641:cas3HD Type: Type-I Location: 16797-19118 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19129-19830 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19832-20746 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 20748-21098 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 13252-14795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUB01000131.1 Clostridioides difficile FD207 DNA, sequence131, whole genome shotgun sequence

⇒Summary: seq-len = 11211 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6163 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 1-402 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 407-1882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1902-2915 bp Gene: cd09693:cas5 Type: Type-I Location: 2931-3728 bp Gene: cd09641:cas3HD Type: Type-I Location: 3755-6163 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)