CRISPRone

CRISPRone report for GCA_004317465.1_ASM431746v1

♦ Seq 1: BIUC01000366.1 Clostridioides difficile FD208 DNA, sequence366, whole genome shotgun sequence

⇒Summary: seq-len = 3062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-282 bp Zoom in on locus 1 x5 CRISPR array Location: 0-282 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-282 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUC01000399.1 Clostridioides difficile FD208 DNA, sequence399, whole genome shotgun sequence

⇒Summary: seq-len = 2577 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 149-1975 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 149-946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 962-1975 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUC01000495.1 Clostridioides difficile FD208 DNA, sequence495, whole genome shotgun sequence

⇒Summary: seq-len = 1492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1137 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1137 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1137 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUC01000018.1 Clostridioides difficile FD208 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 28403 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1237-1660 bp Zoom in on locus 1 x7 CRISPR array Location: 1237-1660 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1237-1660 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1237-1660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUC01000164.1 Clostridioides difficile FD208 DNA, sequence164, whole genome shotgun sequence

⇒Summary: seq-len = 8498 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8019 bp Zoom in on locus 1 x7 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-1647 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1649-2563 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2565-3266 bp Gene: COG1203:cas3 Type: Type-I Location: 3277-5598 bp Gene: pfam01930:cas4 Type: Type-I Location: 5613-6083 bp Gene: cd09722:cas1 Type: universal Location: 6167-7147 bp Gene: cd09725:cas2 Type: universal Location: 7150-7416 bp CRISPR array Location: 7600-8019 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7600-8019 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7600-8019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUC01000224.1 Clostridioides difficile FD208 DNA, sequence224, whole genome shotgun sequence

⇒Summary: seq-len = 5909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5425-5919 bp Zoom in on locus 1 x8 CRISPR array Location: 5425-5919 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5425-5919 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5425-5919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUC01000198.1 Clostridioides difficile FD208 DNA, sequence198, whole genome shotgun sequence

⇒Summary: seq-len = 6935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4873-5294 bp Zoom in on locus 1 x7 CRISPR array Location: 4873-5294 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4873-5294 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4873-5294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUC01000413.1 Clostridioides difficile FD208 DNA, sequence413, whole genome shotgun sequence

⇒Summary: seq-len = 2441 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1622-2440 bp Zoom in on locus 1 x13 CRISPR array Location: 1622-2440 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1622-2440 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1622-2440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)