CRISPRone

CRISPRone report for GCA_004317485.1_ASM431748v1

♦ Seq 1: BIUD01000032.1 Clostridioides difficile FD209 DNA, sequence032, whole genome shotgun sequence

⇒Summary: seq-len = 38865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 671-962 bp Zoom in on locus 1 x5 CRISPR array Location: 671-962 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 671-962 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 671-962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUD01000005.1 Clostridioides difficile FD209 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 94738 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17714-25579 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17714-20122 bp Gene: cd09693:cas5 Type: Type-I Location: 20149-20946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20962-21975 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21995-23470 bp Gene: pfam01881:cas6 Type: other Location: 23475-24212 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 24470-25579 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUD01000015.1 Clostridioides difficile FD209 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 52345 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44271-44432 bp Zoom in on locus 1 x3 CRISPR array Location: 44271-44432 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 44271-44432 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44271-44432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUD01000033.1 Clostridioides difficile FD209 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 38757 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-10935 bp Zoom in on locus 1 x45 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 3-1391 bp Gene: pfam05107:cas7b Type: Type-I Location: 1384-2373 bp Gene: cd09693:cas5 Type: Type-I Location: 2375-3115 bp Gene: cd09641:cas3HD Type: Type-I Location: 3139-5697 bp CRISPR array Location: 5887-8823 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 5887-8823 bp Num of repeats: 45 Spacers: s1-s44 Gene: pfam01930:cas4 Type: Type-I Location: 8907-9401 bp Gene: cd09722:cas1 Type: universal Location: 9427-10434 bp Gene: cd09725:cas2 Type: universal Location: 10645-10935 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5887-8823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUD01000020.1 Clostridioides difficile FD209 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 48514 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2982-3209 bp Zoom in on locus 1 x4 CRISPR array Location: 2982-3209 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2982-3209 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2982-3209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUD01000034.1 Clostridioides difficile FD209 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 38624 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38275-38636 bp Zoom in on locus 1 x6 CRISPR array Location: 38275-38636 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38275-38636 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38275-38636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUD01000185.1 Clostridioides difficile FD209 DNA, sequence185, whole genome shotgun sequence

⇒Summary: seq-len = 1351 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137-1350 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 137-832 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 844-1350 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUD01000007.1 Clostridioides difficile FD209 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 69421 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8850-9600 bp Zoom in on locus 1 x12 CRISPR array Location: 8850-9600 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8850-9600 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8850-9600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUD01000013.1 Clostridioides difficile FD209 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 55985 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22308-22664 bp Zoom in on locus 1 x6 CRISPR array Location: 22308-22664 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 22308-22664 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22308-22664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUD01000119.1 Clostridioides difficile FD209 DNA, sequence119, whole genome shotgun sequence

⇒Summary: seq-len = 9855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5386-5944 bp Zoom in on locus 1 x9 CRISPR array Location: 5386-5944 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5386-5944 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5386-5944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUD01000127.1 Clostridioides difficile FD209 DNA, sequence127, whole genome shotgun sequence

⇒Summary: seq-len = 7469 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 170-463 bp Zoom in on locus 1 x5 CRISPR array Location: 170-463 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 170-463 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 170-463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)