CRISPRone

CRISPRone report for GCA_004317545.1_ASM431754v1

♦ Seq 1: BIUG01000090.1 Clostridioides difficile FD212 DNA, sequence090, whole genome shotgun sequence

⇒Summary: seq-len = 15658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9405-9826 bp Zoom in on locus 1 x7 CRISPR array Location: 9405-9826 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 9405-9826 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9405-9826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUG01000213.1 Clostridioides difficile FD212 DNA, sequence213, whole genome shotgun sequence

⇒Summary: seq-len = 1221 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1178 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-471 bp Gene: cd09652:cas6 Type: other Location: 483-1178 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUG01000174.1 Clostridioides difficile FD212 DNA, sequence174, whole genome shotgun sequence

⇒Summary: seq-len = 4081 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2343 bp Zoom in on locus 1 x36 CRISPR array Location: 2-2343 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 2-2343 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-2343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUG01000006.1 Clostridioides difficile FD212 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 89518 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 792-1349 bp Zoom in on locus 1 x9 CRISPR array Location: 792-1349 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 792-1349 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 792-1349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUG01000159.1 Clostridioides difficile FD212 DNA, sequence159, whole genome shotgun sequence

⇒Summary: seq-len = 5239 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-156 bp Zoom in on locus 1 x3 CRISPR array Location: 0-156 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-156 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-156 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUG01000140.1 Clostridioides difficile FD212 DNA, sequence140, whole genome shotgun sequence

⇒Summary: seq-len = 6789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5995-6222 bp Zoom in on locus 1 x4 CRISPR array Location: 5995-6222 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5995-6222 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5995-6222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUG01000068.1 Clostridioides difficile FD212 DNA, sequence068, whole genome shotgun sequence

⇒Summary: seq-len = 19883 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11671-11832 bp Zoom in on locus 1 x3 CRISPR array Location: 11671-11832 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11671-11832 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11671-11832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUG01000041.1 Clostridioides difficile FD212 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 30160 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-2196 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 168-662 bp Gene: cd09722:cas1 Type: universal Location: 688-1695 bp Gene: cd09725:cas2 Type: universal Location: 1906-2196 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUG01000152.1 Clostridioides difficile FD212 DNA, sequence152, whole genome shotgun sequence

⇒Summary: seq-len = 5667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5313-5674 bp Zoom in on locus 1 x6 CRISPR array Location: 5313-5674 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5313-5674 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5313-5674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUG01000185.1 Clostridioides difficile FD212 DNA, sequence185, whole genome shotgun sequence

⇒Summary: seq-len = 3148 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243-3145 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 243-983 bp Gene: pfam05107:cas7b Type: Type-I Location: 985-1974 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1967-3145 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUG01000004.1 Clostridioides difficile FD212 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 94660 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69082-76947 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69082-70191 bp Gene: pfam01881:cas6 Type: other Location: 70449-71186 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71191-72666 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72686-73699 bp Gene: cd09693:cas5 Type: Type-I Location: 73715-74512 bp Gene: cd09641:cas3HD Type: Type-I Location: 74539-76947 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)