CRISPRone

CRISPRone report for GCA_004317565.1_ASM431756v1

♦ Seq 1: BIUH01000007.1 Clostridioides difficile FD213 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 77208 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16338-27552 bp Zoom in on locus 1 x26 CRISPR array Location: 16338-18014 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 16338-18014 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 18198-18464 bp Gene: cd09722:cas1 Type: universal Location: 18467-19447 bp Gene: pfam01930:cas4 Type: Type-I Location: 19450-19968 bp Gene: cd09641:cas3HD Type: Type-I Location: 20016-22337 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 22348-23049 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23051-23965 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 23967-25253 bp Gene: unk Type: unknown Location: 25311-25817 bp Gene: pfam01881:cas6 Type: other Location: 25823-26617 bp Gene: pfam13280:WYL Type: other Location: 26638-27552 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16338-18014 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUH01000044.1 Clostridioides difficile FD213 DNA, sequence044, whole genome shotgun sequence

⇒Summary: seq-len = 33673 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-3219 bp 2 Locus 2: 27130-27422 bp Zoom in on locus 1 x4 x6 Zoom in on locus 2 x5 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2859-3219 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 2859-3219 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 27130-27422 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 27130-27422 bp Num of repeats: 5 Spacers: s9-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-215 bp]: array | spacers
           [Locus range 2859-3219 bp]: array | spacers
           [Locus range 27130-27422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUH01000032.1 Clostridioides difficile FD213 DNA, sequence032, whole genome shotgun sequence

⇒Summary: seq-len = 41730 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 267-362 bp Zoom in on locus 1 x2 CRISPR array Location: 267-362 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 267-362 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 267-362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUH01000015.1 Clostridioides difficile FD213 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 58405 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36469-46201 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 36469-38877 bp Gene: cd09693:cas5 Type: Type-I Location: 38904-39701 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 39717-40730 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 40750-42225 bp Gene: pfam01881:cas6 Type: other Location: 42230-42967 bp Gene: unk Type: unknown Location: 43281-43739 bp Gene: cas14:cas14 Type: Type-V Location: 43767-44939 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 45092-46201 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUH01000012.1 Clostridioides difficile FD213 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 60901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35565-35855 bp Zoom in on locus 1 x5 CRISPR array Location: 35565-35855 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35565-35855 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35565-35855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUH01000156.1 Clostridioides difficile FD213 DNA, sequence156, whole genome shotgun sequence

⇒Summary: seq-len = 4145 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 566-1119 bp Zoom in on locus 1 x9 CRISPR array Location: 566-1119 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 566-1119 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 566-1119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUH01000116.1 Clostridioides difficile FD213 DNA, sequence116, whole genome shotgun sequence

⇒Summary: seq-len = 10499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2798-3025 bp Zoom in on locus 1 x4 CRISPR array Location: 2798-3025 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2798-3025 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2798-3025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUH01000083.1 Clostridioides difficile FD213 DNA, sequence083, whole genome shotgun sequence

⇒Summary: seq-len = 16582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2947-3431 bp Zoom in on locus 1 x8 CRISPR array Location: 2947-3431 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2947-3431 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2947-3431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUH01000097.1 Clostridioides difficile FD213 DNA, sequence097, whole genome shotgun sequence

⇒Summary: seq-len = 13336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6545-7961 bp Zoom in on locus 1 x22 CRISPR array Location: 6545-7961 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 6545-7961 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6545-7961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUH01000121.1 Clostridioides difficile FD213 DNA, sequence121, whole genome shotgun sequence

⇒Summary: seq-len = 9843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3924-4483 bp Zoom in on locus 1 x9 CRISPR array Location: 3924-4483 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3924-4483 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3924-4483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUH01000161.1 Clostridioides difficile FD213 DNA, sequence161, whole genome shotgun sequence

⇒Summary: seq-len = 3325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2353-2775 bp Zoom in on locus 1 x7 CRISPR array Location: 2353-2775 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2353-2775 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2353-2775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)