CRISPRone

CRISPRone report for GCA_004317645.1_ASM431764v1

♦ Seq 1: BIUL01000006.1 Clostridioides difficile FD217 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 95304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18329-18755 bp Zoom in on locus 1 x7 CRISPR array Location: 18329-18755 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 18329-18755 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18329-18755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUL01000065.1 Clostridioides difficile FD217 DNA, sequence065, whole genome shotgun sequence

⇒Summary: seq-len = 20505 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20019-20512 bp Zoom in on locus 1 x8 CRISPR array Location: 20019-20512 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 20019-20512 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20019-20512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUL01000021.1 Clostridioides difficile FD217 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 57996 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6162 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-401 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 406-1881 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1901-2914 bp Gene: cd09693:cas5 Type: Type-I Location: 2930-3727 bp Gene: cd09641:cas3HD Type: Type-I Location: 3754-6162 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUL01000087.1 Clostridioides difficile FD217 DNA, sequence087, whole genome shotgun sequence

⇒Summary: seq-len = 14849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7618-7712 bp Zoom in on locus 1 x2 CRISPR array Location: 7618-7712 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7618-7712 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7618-7712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUL01000092.1 Clostridioides difficile FD217 DNA, sequence092, whole genome shotgun sequence

⇒Summary: seq-len = 13526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5543-5637 bp Zoom in on locus 1 x2 CRISPR array Location: 5543-5637 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5543-5637 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5543-5637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUL01000096.1 Clostridioides difficile FD217 DNA, sequence096, whole genome shotgun sequence

⇒Summary: seq-len = 12855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5084-5510 bp Zoom in on locus 1 x7 CRISPR array Location: 5084-5510 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5084-5510 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5084-5510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUL01000149.1 Clostridioides difficile FD217 DNA, sequence149, whole genome shotgun sequence

⇒Summary: seq-len = 3197 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-226 bp Zoom in on locus 1 x4 CRISPR array Location: 1-226 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-226 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUL01000048.1 Clostridioides difficile FD217 DNA, sequence048, whole genome shotgun sequence

⇒Summary: seq-len = 28355 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16281-27692 bp Zoom in on locus 1 x29 CRISPR array Location: 16281-18154 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 16281-18154 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 18338-18604 bp Gene: cd09722:cas1 Type: universal Location: 18607-19587 bp Gene: pfam01930:cas4 Type: Type-I Location: 19590-20108 bp Gene: COG1203:cas3 Type: Type-I Location: 20156-22477 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 22488-23189 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23191-24105 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 24107-25957 bp Gene: pfam01881:cas6 Type: other Location: 25963-26757 bp Gene: pfam13280:WYL Type: other Location: 26778-27692 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16281-18154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUL01000169.1 Clostridioides difficile FD217 DNA, sequence169, whole genome shotgun sequence

⇒Summary: seq-len = 2290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1943-2302 bp Zoom in on locus 1 x6 CRISPR array Location: 1943-2302 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1943-2302 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1943-2302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUL01000042.1 Clostridioides difficile FD217 DNA, sequence042, whole genome shotgun sequence

⇒Summary: seq-len = 31830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2827-3579 bp Zoom in on locus 1 x12 CRISPR array Location: 2827-3579 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2827-3579 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2827-3579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUL01000019.1 Clostridioides difficile FD217 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 60269 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24248-24937 bp Zoom in on locus 1 x11 CRISPR array Location: 24248-24937 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 24248-24937 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24248-24937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)