CRISPRone

CRISPRone report for GCA_004317765.1_ASM431776v1

♦ Seq 1: BIUR01000137.1 Clostridioides difficile FD224 DNA, sequence137, whole genome shotgun sequence

⇒Summary: seq-len = 1047 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 366-856 bp Zoom in on locus 1 x8 CRISPR array Location: 366-856 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 366-856 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 366-856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUR01000007.1 Clostridioides difficile FD224 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 100895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13978-14206 bp Zoom in on locus 1 x4 CRISPR array Location: 13978-14206 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 13978-14206 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13978-14206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUR01000077.1 Clostridioides difficile FD224 DNA, sequence077, whole genome shotgun sequence

⇒Summary: seq-len = 17201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9491-9982 bp Zoom in on locus 1 x8 CRISPR array Location: 9491-9982 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 9491-9982 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9491-9982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUR01000033.1 Clostridioides difficile FD224 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 50091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22224-22318 bp Zoom in on locus 1 x2 CRISPR array Location: 22224-22318 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22224-22318 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22224-22318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUR01000072.1 Clostridioides difficile FD224 DNA, sequence072, whole genome shotgun sequence

⇒Summary: seq-len = 19169 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18443-18603 bp Zoom in on locus 1 x3 CRISPR array Location: 18443-18603 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18443-18603 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18443-18603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUR01000053.1 Clostridioides difficile FD224 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 29612 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18605-23916 bp Zoom in on locus 1 x14 x8 CRISPR array Location: 18605-19488 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 18605-19488 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 23430-23916 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 23430-23916 bp Num of repeats: 8 Spacers: s14-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18605-19488 bp]: array | spacers
           [Locus range 23430-23916 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUR01000008.1 Clostridioides difficile FD224 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 100776 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89224-89318 bp Zoom in on locus 1 x2 CRISPR array Location: 89224-89318 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 89224-89318 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89224-89318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUR01000035.1 Clostridioides difficile FD224 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 48570 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10664-10945 bp Zoom in on locus 1 x2 x2 CRISPR array Location: 10664-10759 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 10664-10759 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 10851-10945 bp Num of repeats: 2 Spacers: s2-s2 CRISPR array Location: 10851-10945 bp Num of repeats: 2 Spacers: s2-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10664-10759 bp]: array | spacers
           [Locus range 10851-10945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUR01000004.1 Clostridioides difficile FD224 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 126042 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65935-74277 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 65935-67044 bp Gene: pfam01881:cas6 Type: other Location: 67782-68519 bp Gene: mkCas0150:cas11b Type: Subtype-I-B Location: 68524-69999 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70016-71029 bp Gene: cd09693:cas5 Type: Type-I Location: 71045-71842 bp Gene: cd09641:cas3HD Type: Type-I Location: 71869-74277 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUR01000015.1 Clostridioides difficile FD224 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 77193 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7229-17576 bp Zoom in on locus 1 x12 CRISPR array Location: 7229-7978 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 7229-7978 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09725:cas2 Type: universal Location: 8162-8428 bp Gene: cd09722:cas1 Type: universal Location: 8431-9411 bp Gene: pfam01930:cas4 Type: Type-I Location: 9414-9932 bp Gene: COG1203:cas3 Type: Type-I Location: 9980-12301 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12312-13013 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13015-13929 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13931-15802 bp Gene: pfam01881:cas6 Type: other Location: 15808-16602 bp Gene: pfam13280:WYL Type: other Location: 16623-17576 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7229-7978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)