CRISPRone

CRISPRone report for GCA_004317785.1_ASM431778v1

♦ Seq 1: BIUS01000468.1 Clostridioides difficile FD225 DNA, sequence468, whole genome shotgun sequence

⇒Summary: seq-len = 2263 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55-2277 bp Zoom in on locus 1 x4 x5 CRISPR array Location: 55-281 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 55-281 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1985-2277 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 1985-2277 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55-281 bp]: array | spacers
           [Locus range 1985-2277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUS01000467.1 Clostridioides difficile FD225 DNA, sequence467, whole genome shotgun sequence

⇒Summary: seq-len = 2265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180-1066 bp Zoom in on locus 1 x14 CRISPR array Location: 180-1066 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 180-1066 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 180-1066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUS01000408.1 Clostridioides difficile FD225 DNA, sequence408, whole genome shotgun sequence

⇒Summary: seq-len = 3010 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1069 bp Zoom in on locus 1 x17 CRISPR array Location: 0-1069 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-1069 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUS01000584.1 Clostridioides difficile FD225 DNA, sequence584, whole genome shotgun sequence

⇒Summary: seq-len = 1112 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 555-1113 bp Zoom in on locus 1 x9 CRISPR array Location: 555-1113 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 555-1113 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 555-1113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUS01000022.1 Clostridioides difficile FD225 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 20157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19412-20103 bp Zoom in on locus 1 x11 CRISPR array Location: 19412-20103 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 19412-20103 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19412-20103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUS01000139.1 Clostridioides difficile FD225 DNA, sequence139, whole genome shotgun sequence

⇒Summary: seq-len = 8467 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5589-8466 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 5589-6476 bp Gene: pfam01881:cas6 Type: other Location: 6554-7291 bp Gene: unk Type: unknown Location: 7297-7464 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 7582-8466 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUS01000159.1 Clostridioides difficile FD225 DNA, sequence159, whole genome shotgun sequence

⇒Summary: seq-len = 7826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-879 bp Zoom in on locus 1 x14 CRISPR array Location: 0-879 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-879 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUS01000286.1 Clostridioides difficile FD225 DNA, sequence286, whole genome shotgun sequence

⇒Summary: seq-len = 4819 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-4818 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 16-2337 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2348-3049 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3051-3965 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3967-4818 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUS01000377.1 Clostridioides difficile FD225 DNA, sequence377, whole genome shotgun sequence

⇒Summary: seq-len = 3427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-753 bp Zoom in on locus 1 x12 CRISPR array Location: 0-753 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 0-753 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUS01000030.1 Clostridioides difficile FD225 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 18875 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2536 bp Zoom in on locus 1 x4 x10 CRISPR array Location: 0-214 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-214 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1916-2536 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1916-2536 bp Num of repeats: 10 Spacers: s4-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-214 bp]: array | spacers
           [Locus range 1916-2536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIUS01000496.1 Clostridioides difficile FD225 DNA, sequence496, whole genome shotgun sequence

⇒Summary: seq-len = 1899 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1739-1899 bp Zoom in on locus 1 x3 CRISPR array Location: 1739-1899 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1739-1899 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1739-1899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIUS01000435.1 Clostridioides difficile FD225 DNA, sequence435, whole genome shotgun sequence

⇒Summary: seq-len = 2725 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2498 bp Zoom in on locus 1 x9 CRISPR array Location: 0-544 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 0-544 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 728-994 bp Gene: cd09722:cas1 Type: universal Location: 997-1977 bp Gene: pfam01930:cas4 Type: Type-I Location: 1980-2498 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-544 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIUS01000323.1 Clostridioides difficile FD225 DNA, sequence323, whole genome shotgun sequence

⇒Summary: seq-len = 4182 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-4179 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 3-425 bp Gene: cd09693:cas5 Type: Type-I Location: 452-1249 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1265-2281 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2301-3776 bp Gene: pfam01881:cas6 Type: other Location: 3781-4179 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: BIUS01000568.1 Clostridioides difficile FD225 DNA, sequence568, whole genome shotgun sequence

⇒Summary: seq-len = 1268 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 323-1270 bp Zoom in on locus 1 x15 CRISPR array Location: 323-1270 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 323-1270 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 323-1270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)