CRISPRone

CRISPRone report for GCA_004317905.1_ASM431790v1

♦ Seq 1: BIUY01000098.1 Clostridioides difficile FD231 DNA, sequence098, whole genome shotgun sequence

⇒Summary: seq-len = 11188 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5085-5246 bp Zoom in on locus 1 x3 CRISPR array Location: 5085-5246 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5085-5246 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5085-5246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIUY01000094.1 Clostridioides difficile FD231 DNA, sequence094, whole genome shotgun sequence

⇒Summary: seq-len = 11807 bp; # of CRISPR array = 1; # of cas gene = 5  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5739 bp Zoom in on locus 1 x30 Gene: cd09639:cas3 Type: Type-I Location: 2-670 bp Gene: COG1203:cas3 Type: Type-I Location: 687-1490 bp CRISPR array Location: 1680-3627 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 1680-3627 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam01930:cas4 Type: Type-I Location: 3711-4205 bp Gene: cd09722:cas1 Type: universal Location: 4231-5238 bp Gene: cd09725:cas2 Type: universal Location: 5449-5739 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1680-3627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIUY01000129.1 Clostridioides difficile FD231 DNA, sequence129, whole genome shotgun sequence

⇒Summary: seq-len = 5697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-350 bp Zoom in on locus 1 x6 CRISPR array Location: 0-350 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-350 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIUY01000012.1 Clostridioides difficile FD231 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 67057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61061-61618 bp Zoom in on locus 1 x9 CRISPR array Location: 61061-61618 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 61061-61618 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61061-61618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIUY01000102.1 Clostridioides difficile FD231 DNA, sequence102, whole genome shotgun sequence

⇒Summary: seq-len = 10584 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3707-3933 bp Zoom in on locus 1 x4 CRISPR array Location: 3707-3933 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3707-3933 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3707-3933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIUY01000114.1 Clostridioides difficile FD231 DNA, sequence114, whole genome shotgun sequence

⇒Summary: seq-len = 7937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5621-6041 bp Zoom in on locus 1 x7 CRISPR array Location: 5621-6041 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5621-6041 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5621-6041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIUY01000017.1 Clostridioides difficile FD231 DNA, sequence017, whole genome shotgun sequence

⇒Summary: seq-len = 57908 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6163 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 1-402 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 407-1882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1902-2915 bp Gene: cd09693:cas5 Type: Type-I Location: 2931-3728 bp Gene: cd09641:cas3HD Type: Type-I Location: 3755-6163 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIUY01000002.1 Clostridioides difficile FD231 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 122179 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110194-110945 bp Zoom in on locus 1 x12 CRISPR array Location: 110194-110945 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 110194-110945 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110194-110945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIUY01000088.1 Clostridioides difficile FD231 DNA, sequence088, whole genome shotgun sequence

⇒Summary: seq-len = 12736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7369-7661 bp Zoom in on locus 1 x5 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7369-7661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIUY01000124.1 Clostridioides difficile FD231 DNA, sequence124, whole genome shotgun sequence

⇒Summary: seq-len = 6362 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6223 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 2-541 bp Gene: cd09641:cas3HD Type: Type-I Location: 578-2029 bp Gene: cd09693:cas5 Type: Type-I Location: 2053-2793 bp Gene: pfam05107:cas7b Type: Type-I Location: 2795-3784 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 3777-5516 bp Gene: cd09652:cas6 Type: other Location: 5528-6223 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)