CRISPRone

CRISPRone report for GCA_004317985.1_ASM431798v1

♦ Seq 1: BIVC01000182.1 Clostridioides difficile FD235 DNA, sequence182, whole genome shotgun sequence

⇒Summary: seq-len = 4710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3516-4531 bp Zoom in on locus 1 x16 CRISPR array Location: 3516-4531 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3516-4531 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3516-4531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVC01000073.1 Clostridioides difficile FD235 DNA, sequence073, whole genome shotgun sequence

⇒Summary: seq-len = 19033 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7185-18485 bp Zoom in on locus 1 x27 CRISPR array Location: 7185-8920 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 7185-8920 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 9104-9370 bp Gene: cd09722:cas1 Type: universal Location: 9373-10353 bp Gene: pfam01930:cas4 Type: Type-I Location: 10356-10874 bp Gene: COG1203:cas3 Type: Type-I Location: 10922-13243 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13254-13955 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13957-14871 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14873-16750 bp Gene: pfam01881:cas6 Type: other Location: 16756-17550 bp Gene: pfam13280:WYL Type: other Location: 17571-18485 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7185-8920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVC01000129.1 Clostridioides difficile FD235 DNA, sequence129, whole genome shotgun sequence

⇒Summary: seq-len = 10345 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1000 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1000 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1000 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVC01000156.1 Clostridioides difficile FD235 DNA, sequence156, whole genome shotgun sequence

⇒Summary: seq-len = 6393 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-629 bp Zoom in on locus 1 x10 CRISPR array Location: 1-629 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1-629 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVC01000154.1 Clostridioides difficile FD235 DNA, sequence154, whole genome shotgun sequence

⇒Summary: seq-len = 6511 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5376-6526 bp Zoom in on locus 1 x18 CRISPR array Location: 5376-6526 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5376-6526 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5376-6526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVC01000134.1 Clostridioides difficile FD235 DNA, sequence134, whole genome shotgun sequence

⇒Summary: seq-len = 9571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1498-1657 bp Zoom in on locus 1 x3 CRISPR array Location: 1498-1657 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1498-1657 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1498-1657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVC01000198.1 Clostridioides difficile FD235 DNA, sequence198, whole genome shotgun sequence

⇒Summary: seq-len = 3586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2627-2985 bp Zoom in on locus 1 x6 CRISPR array Location: 2627-2985 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2627-2985 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2627-2985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVC01000002.1 Clostridioides difficile FD235 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 85443 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28355-36220 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28355-30763 bp Gene: cd09693:cas5 Type: Type-I Location: 30790-31587 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31603-32616 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32636-34111 bp Gene: pfam01881:cas6 Type: other Location: 34116-34853 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35111-36220 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVC01000194.1 Clostridioides difficile FD235 DNA, sequence194, whole genome shotgun sequence

⇒Summary: seq-len = 3872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237-796 bp Zoom in on locus 1 x9 CRISPR array Location: 237-796 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 237-796 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 237-796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVC01000012.1 Clostridioides difficile FD235 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 53304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23472-24029 bp Zoom in on locus 1 x9 CRISPR array Location: 23472-24029 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 23472-24029 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23472-24029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIVC01000200.1 Clostridioides difficile FD235 DNA, sequence200, whole genome shotgun sequence

⇒Summary: seq-len = 3476 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2999-3490 bp Zoom in on locus 1 x8 CRISPR array Location: 2999-3490 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2999-3490 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2999-3490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)