CRISPRone

CRISPRone report for GCA_004318065.1_ASM431806v1

♦ Seq 1: BIVG01000164.1 Clostridioides difficile FD239 DNA, sequence164, whole genome shotgun sequence

⇒Summary: seq-len = 5979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5485-5646 bp Zoom in on locus 1 x3 CRISPR array Location: 5485-5646 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5485-5646 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5485-5646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVG01000178.1 Clostridioides difficile FD239 DNA, sequence178, whole genome shotgun sequence

⇒Summary: seq-len = 4553 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140-4310 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 140-835 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 847-2586 bp Gene: pfam05107:cas7b Type: Type-I Location: 2579-3568 bp Gene: cd09693:cas5 Type: Type-I Location: 3570-4310 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVG01000055.1 Clostridioides difficile FD239 DNA, sequence055, whole genome shotgun sequence

⇒Summary: seq-len = 25739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19598-20019 bp Zoom in on locus 1 x7 CRISPR array Location: 19598-20019 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19598-20019 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19598-20019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVG01000197.1 Clostridioides difficile FD239 DNA, sequence197, whole genome shotgun sequence

⇒Summary: seq-len = 2940 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1256-2935 bp Zoom in on locus 1 x26 CRISPR array Location: 1256-2935 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1256-2935 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1256-2935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVG01000008.1 Clostridioides difficile FD239 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 59097 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53155-53712 bp Zoom in on locus 1 x9 CRISPR array Location: 53155-53712 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 53155-53712 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53155-53712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVG01000009.1 Clostridioides difficile FD239 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 57952 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6162 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-401 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 406-1881 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1901-2914 bp Gene: cd09693:cas5 Type: Type-I Location: 2930-3727 bp Gene: cd09641:cas3HD Type: Type-I Location: 3754-6162 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVG01000074.1 Clostridioides difficile FD239 DNA, sequence074, whole genome shotgun sequence

⇒Summary: seq-len = 20323 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17039-17265 bp Zoom in on locus 1 x4 CRISPR array Location: 17039-17265 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17039-17265 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17039-17265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVG01000037.1 Clostridioides difficile FD239 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 30881 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27749-30881 bp Zoom in on locus 1 x16 Gene: cd09725:cas2 Type: universal Location: 27749-28039 bp Gene: cd09722:cas1 Type: universal Location: 28250-29257 bp Gene: pfam01930:cas4 Type: Type-I Location: 29283-29777 bp CRISPR array Location: 29862-30881 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 29862-30881 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29862-30881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVG01000124.1 Clostridioides difficile FD239 DNA, sequence124, whole genome shotgun sequence

⇒Summary: seq-len = 10906 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-5369 bp Zoom in on locus 1 x5 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-5369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVG01000019.1 Clostridioides difficile FD239 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 45496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-355 bp Zoom in on locus 1 x6 CRISPR array Location: 0-355 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-355 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIVG01000048.1 Clostridioides difficile FD239 DNA, sequence048, whole genome shotgun sequence

⇒Summary: seq-len = 28223 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6478-7229 bp Zoom in on locus 1 x12 CRISPR array Location: 6478-7229 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 6478-7229 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6478-7229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)