CRISPRone

CRISPRone report for GCA_004318085.1_ASM431808v1

♦ Seq 1: BIVH01000013.1 Clostridioides difficile FD240 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 114663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7977-8139 bp Zoom in on locus 1 x3 CRISPR array Location: 7977-8139 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7977-8139 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7977-8139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVH01000002.1 Clostridioides difficile FD240 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 198685 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189635-189928 bp Zoom in on locus 1 x5 CRISPR array Location: 189635-189928 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189635-189928 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189635-189928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVH01000036.1 Clostridioides difficile FD240 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 34055 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6652-6879 bp Zoom in on locus 1 x4 CRISPR array Location: 6652-6879 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6652-6879 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6652-6879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVH01000018.1 Clostridioides difficile FD240 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 71816 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12206-20071 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12206-13315 bp Gene: pfam01881:cas6 Type: other Location: 13573-14310 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 14315-15790 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 15810-16823 bp Gene: cd09693:cas5 Type: Type-I Location: 16839-17636 bp Gene: cd09641:cas3HD Type: Type-I Location: 17663-20071 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVH01000015.1 Clostridioides difficile FD240 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 104423 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25957-26708 bp Zoom in on locus 1 x12 CRISPR array Location: 25957-26708 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 25957-26708 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25957-26708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVH01000037.1 Clostridioides difficile FD240 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 33225 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24219-33238 bp Zoom in on locus 1 x32 Gene: cd09652:cas6 Type: other Location: 24219-24914 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 24926-26665 bp Gene: pfam05107:cas7b Type: Type-I Location: 26658-27647 bp Gene: cd09693:cas5 Type: Type-I Location: 27649-28389 bp Gene: cd09641:cas3HD Type: Type-I Location: 28413-30971 bp CRISPR array Location: 31161-33238 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 31161-33238 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31161-33238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVH01000016.1 Clostridioides difficile FD240 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 104239 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2935 bp Zoom in on locus 1 x13 CRISPR array Location: 0-823 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-823 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam01930:cas4 Type: Type-I Location: 907-1401 bp Gene: cd09722:cas1 Type: universal Location: 1436-2434 bp Gene: cd09725:cas2 Type: universal Location: 2645-2935 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVH01000001.1 Clostridioides difficile FD240 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 263825 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 202206-202764 bp Zoom in on locus 1 x9 CRISPR array Location: 202206-202764 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 202206-202764 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 202206-202764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVH01000030.1 Clostridioides difficile FD240 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 41694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVH01000004.1 Clostridioides difficile FD240 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 173539 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88485-88906 bp Zoom in on locus 1 x7 CRISPR array Location: 88485-88906 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 88485-88906 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88485-88906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)