CRISPRone

CRISPRone report for GCA_004318185.1_ASM431818v1

♦ Seq 1: BIVM01000003.1 Clostridioides difficile FD246 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 148990 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50630-62628 bp Zoom in on locus 1 x38 Gene: pfam13280:WYL Type: other Location: 50630-51517 bp Gene: pfam01881:cas6 Type: other Location: 51595-52332 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 52338-54215 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54217-55131 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 55133-55834 bp Gene: cd09641:cas3HD Type: Type-I Location: 55845-58166 bp Gene: pfam01930:cas4 Type: Type-I Location: 58181-58732 bp Gene: cd09722:cas1 Type: universal Location: 58735-59715 bp Gene: cd09725:cas2 Type: universal Location: 59718-59984 bp CRISPR array Location: 60168-62628 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 60168-62628 bp Num of repeats: 38 Spacers: s1-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 60168-62628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVM01000038.1 Clostridioides difficile FD246 DNA, sequence038, whole genome shotgun sequence

⇒Summary: seq-len = 39384 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21093-21453 bp Zoom in on locus 1 x6 CRISPR array Location: 21093-21453 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 21093-21453 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21093-21453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVM01000114.1 Clostridioides difficile FD246 DNA, sequence114, whole genome shotgun sequence

⇒Summary: seq-len = 3526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2904-3527 bp Zoom in on locus 1 x10 CRISPR array Location: 2904-3527 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2904-3527 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2904-3527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVM01000035.1 Clostridioides difficile FD246 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 40365 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33789-40287 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33789-36197 bp Gene: cd09693:cas5 Type: Type-I Location: 36224-37021 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37037-38050 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38070-39545 bp Gene: pfam01881:cas6 Type: other Location: 39550-40287 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVM01000002.1 Clostridioides difficile FD246 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 164199 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144797-145952 bp Zoom in on locus 1 x18 CRISPR array Location: 144797-145952 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 144797-145952 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 144797-145952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVM01000042.1 Clostridioides difficile FD246 DNA, sequence042, whole genome shotgun sequence

⇒Summary: seq-len = 38333 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14216-14507 bp Zoom in on locus 1 x5 CRISPR array Location: 14216-14507 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 14216-14507 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14216-14507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVM01000009.1 Clostridioides difficile FD246 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 80702 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74565-75254 bp Zoom in on locus 1 x11 CRISPR array Location: 74565-75254 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 74565-75254 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74565-75254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVM01000095.1 Clostridioides difficile FD246 DNA, sequence095, whole genome shotgun sequence

⇒Summary: seq-len = 8998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-692 bp Zoom in on locus 1 x11 CRISPR array Location: 1-692 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-692 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVM01000062.1 Clostridioides difficile FD246 DNA, sequence062, whole genome shotgun sequence

⇒Summary: seq-len = 21485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 802-3345 bp Zoom in on locus 1 x39 CRISPR array Location: 802-3345 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 802-3345 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 802-3345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVM01000011.1 Clostridioides difficile FD246 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 77710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17422-18242 bp Zoom in on locus 1 x13 CRISPR array Location: 17422-18242 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 17422-18242 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17422-18242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIVM01000039.1 Clostridioides difficile FD246 DNA, sequence039, whole genome shotgun sequence

⇒Summary: seq-len = 39112 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23047-30065 bp Zoom in on locus 1 x13 Gene: cd09693:cas5 Type: Type-I Location: 23047-23694 bp Gene: pfam01881:cas6 Type: other Location: 23685-24449 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 24451-25599 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 25620-26690 bp Gene: COG1203:cas3 Type: Type-I Location: 26701-28683 bp CRISPR array Location: 29249-30065 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 29249-30065 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29249-30065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)