CRISPRone

CRISPRone report for GCA_004318225.1_ASM431822v1

♦ Seq 1: BIVO01000019.1 Clostridioides difficile FD248 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 59782 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23993-24282 bp Zoom in on locus 1 x5 CRISPR array Location: 23993-24282 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23993-24282 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23993-24282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVO01000138.1 Clostridioides difficile FD248 DNA, sequence138, whole genome shotgun sequence

⇒Summary: seq-len = 1998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-278 bp Zoom in on locus 1 x5 CRISPR array Location: 0-278 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-278 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVO01000009.1 Clostridioides difficile FD248 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 89700 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4745-5168 bp Zoom in on locus 1 x7 CRISPR array Location: 4745-5168 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4745-5168 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4745-5168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVO01000095.1 Clostridioides difficile FD248 DNA, sequence095, whole genome shotgun sequence

⇒Summary: seq-len = 9179 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66-3165 bp Zoom in on locus 1 x2 x6 CRISPR array Location: 66-161 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 66-161 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2805-3165 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 2805-3165 bp Num of repeats: 6 Spacers: s2-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66-161 bp]: array | spacers
           [Locus range 2805-3165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVO01000105.1 Clostridioides difficile FD248 DNA, sequence105, whole genome shotgun sequence

⇒Summary: seq-len = 6550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4209-4437 bp Zoom in on locus 1 x4 CRISPR array Location: 4209-4437 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4209-4437 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4209-4437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVO01000031.1 Clostridioides difficile FD248 DNA, sequence031, whole genome shotgun sequence

⇒Summary: seq-len = 48488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2883-3437 bp Zoom in on locus 1 x9 CRISPR array Location: 2883-3437 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2883-3437 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2883-3437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVO01000002.1 Clostridioides difficile FD248 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 147426 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51727-61459 bp 2 Locus 2: 136617-137176 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 51727-54135 bp Gene: cd09693:cas5 Type: Type-I Location: 54162-54959 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54975-55988 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56008-57483 bp Gene: pfam01881:cas6 Type: other Location: 57488-58225 bp Gene: unk Type: unknown Location: 58539-58997 bp Gene: cas14:cas14 Type: Type-V Location: 59025-60197 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60350-61459 bp CRISPR array Location: 136617-137176 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 136617-137176 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 136617-137176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVO01000070.1 Clostridioides difficile FD248 DNA, sequence070, whole genome shotgun sequence

⇒Summary: seq-len = 20094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2426-2521 bp Zoom in on locus 1 x2 CRISPR array Location: 2426-2521 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2426-2521 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2426-2521 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVO01000001.1 Clostridioides difficile FD248 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 180537 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18164-18456 bp Zoom in on locus 1 x5 CRISPR array Location: 18164-18456 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18164-18456 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18164-18456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVO01000029.1 Clostridioides difficile FD248 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 49470 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31333-42548 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 31333-32247 bp Gene: pfam01881:cas6 Type: other Location: 32325-33062 bp Gene: unk Type: unknown Location: 33068-33574 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 33632-34918 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 34920-35834 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 35836-36537 bp Gene: cd09641:cas3HD Type: Type-I Location: 36548-38869 bp Gene: pfam01930:cas4 Type: Type-I Location: 38884-39435 bp Gene: cd09722:cas1 Type: universal Location: 39438-40418 bp Gene: cd09725:cas2 Type: universal Location: 40421-40687 bp CRISPR array Location: 40871-42548 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 40871-42548 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40871-42548 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIVO01000072.1 Clostridioides difficile FD248 DNA, sequence072, whole genome shotgun sequence

⇒Summary: seq-len = 19570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1406 bp Zoom in on locus 1 x22 CRISPR array Location: 0-1406 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 0-1406 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)