CRISPRone

CRISPRone report for GCA_004318305.1_ASM431830v1

♦ Seq 1: BIVS01000001.1 Clostridioides difficile FD254 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 139452 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51777-61500 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51777-54185 bp Gene: cd09693:cas5 Type: Type-I Location: 54212-55009 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55025-56038 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56058-57524 bp Gene: pfam01881:cas6 Type: other Location: 57529-58266 bp Gene: unk Type: unknown Location: 58580-59038 bp Gene: cas14:cas14 Type: Type-V Location: 59066-60238 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60391-61500 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVS01000065.1 Clostridioides difficile FD254 DNA, sequence065, whole genome shotgun sequence

⇒Summary: seq-len = 24083 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6083-6243 bp Zoom in on locus 1 x3 CRISPR array Location: 6083-6243 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6083-6243 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6083-6243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVS01000009.1 Clostridioides difficile FD254 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 77132 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45571-48626 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 45571-45798 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 45571-45798 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 48465-48626 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 48465-48626 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45571-45798 bp]: array | spacers
           [Locus range 48465-48626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVS01000104.1 Clostridioides difficile FD254 DNA, sequence104, whole genome shotgun sequence

⇒Summary: seq-len = 9489 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 470-565 bp Zoom in on locus 1 x2 CRISPR array Location: 470-565 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 470-565 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 470-565 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVS01000033.1 Clostridioides difficile FD254 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 45293 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41439-41859 bp Zoom in on locus 1 x7 CRISPR array Location: 41439-41859 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 41439-41859 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41439-41859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVS01000005.1 Clostridioides difficile FD254 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 89270 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2095-2320 bp Zoom in on locus 1 x4 CRISPR array Location: 2095-2320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2095-2320 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2095-2320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)